Usitatibacter palustris: DSM104440_02736
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Entry
DSM104440_02736 CDS
T06995
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
upl
Usitatibacter palustris
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
upl03016
]
DSM104440_02736 (rtcB)
Enzymes [BR:
upl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSM104440_02736 (rtcB)
Transfer RNA biogenesis [BR:
upl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSM104440_02736 (rtcB)
Prokaryotic type
tRNA splicing ligases
DSM104440_02736 (rtcB)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QJR15909
UniProt:
A0A6M4H892
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All DBs
Position
complement(2826583..2827806)
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AA seq
407 aa
AA seq
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MKKTKTDYEVMLPGARLWTGDLEVEGEAIEQIRNVMQLPILAGPVAVMPDVHLGRGATVG
TVIPTRAAIVPAAVGVDIGCGMLAVQTNLSAGDLPHNLGKVRAQIERDVPVGFDYHNQVV
EPEGTAGAVKLDRRMKDLAERYPKLRILEALGGFNEKRLWRQLGSLGGGNHFVEICLDAH
GAVWIMLHSGSRGIGNAIGTTAMEVAKKVADKVDRTLPHRDLAWLDEGTPEFEAYVEGLG
WAQEYASLNRDLMLHLVHKALEKALDRKVEFLGEVTNCHHNYARVEEHFGENVWVTRKGA
VSAQLGELGIIPGSMGARSFIVRGKGEKSSYCSCSHGAGRRMSRTAARKRFTREDLVAQT
AGVECRKDGGVIDEIPSAYKDIDAVMAAQSDLVEIVATLKQILCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaccaagaccgattacgaagtgatgcttccgggagcgcgcctgtggacgggc
gacctggaggtcgaaggcgaagcgatcgagcagatccgcaacgtcatgcagctgccgatc
ctcgccggaccggtggcggtgatgccggacgtgcacctcggccgcggcgcgaccgtgggc
accgtgatcccgacgcgtgcggcgatcgtcccggcggcggtgggtgtcgacatcggctgc
ggaatgctcgccgtgcagacgaacctctccgcgggtgatttgccgcacaacctcggcaag
gttcgcgcgcagatcgagcgcgacgtgccggtcggcttcgactatcacaaccaggtcgtc
gagcctgagggcacggcgggcgcggtgaagcttgatcgccgcatgaaggatctcgcggaa
cgttatccgaagcttcgcatcctcgaagcgttgggcggctttaacgagaagcgcttgtgg
cgccagttgggatcgctcggtgggggcaaccacttcgtcgagatctgcctggatgcccac
ggggcggtctggatcatgctgcactcgggttcgcgcggcatcggcaacgccatcggcacg
acggcgatggaagtggcgaagaaggtggccgacaaggtcgatcgcacgttgccgcaccgc
gacctcgcgtggctcgatgaaggcacgccggagttcgaggcgtacgtggaagggctcggc
tgggcgcaggagtacgcgtcgctcaaccgcgacctgatgctgcatctcgtgcacaaggcg
ctcgagaaggcgctggaccgcaaggtggagttcctcggcgaagtgacgaactgccaccac
aactacgcgcgcgtcgaggagcatttcggcgagaacgtgtgggtgacccgcaagggggcg
gtgagcgcgcaactcggcgagctggggatcatccccggctcgatgggtgccaggagcttc
atcgtgcgcggcaagggcgagaagtcttcgtactgctcttgctcgcacggtgcgggccgc
cgcatgagccgcacggccgcgcgcaagcgcttcacgcgcgaggacctcgtggcgcaaacc
gccggtgtcgagtgtcgcaaggacggtggcgtgatcgacgagatcccgtccgcctacaag
gacatcgatgccgtgatggccgcgcagtcggatctcgtggagatcgtcgcgaccctcaag
cagattctttgcgtgaagggatga
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