Usitatibacter palustris: DSM104440_03180
Help
Entry
DSM104440_03180 CDS
T06995
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
upl
Usitatibacter palustris
Pathway
upl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM104440_03180 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
upl03021
]
DSM104440_03180 (rpoC)
03400 DNA repair and recombination proteins [BR:
upl03400
]
DSM104440_03180 (rpoC)
Enzymes [BR:
upl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM104440_03180 (rpoC)
Transcription machinery [BR:
upl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM104440_03180 (rpoC)
DNA repair and recombination proteins [BR:
upl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM104440_03180 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QJR16351
UniProt:
A0A6M4H9Z0
LinkDB
All DBs
Position
complement(3271327..3275523)
Genome browser
AA seq
1398 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIRIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLNRCQLLSEDDYLAKVEEYGDDFSAAM
GAEGVRDLLRKLDVPRDIDTLRTDLAATSSETKIKKIAKRLKVLEAFNKSGIKPDWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGLATTIKAAKRMVESQEPVVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPISLEAQMEA
RTLMLSSNNVLHTAHGEPVIVPSQDIVLGLYYATRDRVNARGEGSVFTNVAEVSRAYESG
GVELHARVTVRIREVLKNEAGELTEVVNRHETTVGRSLLSEILPAGLPFAIINKALKKKE
ISKLINEAFRRCGIRETVIFADKLMYTGFTYATRAGLSICVDDLLIPSQKASIIDKSEEE
VKEIERQYTSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGSEKVIDRKGKEVSQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTVTGMDMKALVEGGEVVEPLRERIL
GRVVATDVLNPEGHEVVVAAGTPLDEDMVERIESLGIDEVKVRTPLTCDTRFGICARCYG
RDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAVASSVEAKSNGLAQF
SATMRYITNSREEQIAISRSGEIIIADDSGRERERHKVPYGATLTVKDGAKVKAGQSLSN
WDPLTRPIITEYAGETKFDNVEEGVTVAKQIDETTGLSSLVVIDPKRRGTSATKGLRPAV
KLIGDKGKEVKLATGDTPVNYTFQIGAIITVKNGQQVNVGDVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGLLAEITGTVSFGKDTKGKQRLIITDVDGAAHEYLIPKEKHVTVH
DGQVVNKGETIVDGPADPHDILRLQGMEALARYIIDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITDPGDTRFIVGEQVERADYLGENDRARNDGKKPAQFEYMLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHSTRKKKEVEPGAS
ASFGFALDESDVGSEQVA
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctgttcaagcaggtcacccaggaagaagagttcgacgccatt
cgcatcgggctcgcatcgccggacaagatccgctcgtggtcctacggtgaagtgaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgtgacggccttttctgcgccaag
atcttcggcccggtgaaggactatgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgtggcgtcatctgcgagaagtgcggtgtcgaagtcacgctcaccaaggtgcgccgcgag
cgcatgggccatatcgagctcgcgagccccgtcgcccacatctggttcctgaagagcctc
ccgtcccgcctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtcctgtac
ttcgaagcctacgtcgtgaccgacccgggcatgacgccgctcaaccgctgccagctcctc
tccgaggacgactacctcgcgaaggtcgaggagtacggtgacgatttctcggctgccatg
ggcgccgagggcgttcgcgacctgctgcgcaagctcgacgtcccccgcgacatcgacacg
ctgcgcacggacctcgccgccacgtcgtcggaaaccaagatcaagaagatcgccaagcgc
ctgaaggtgctcgaggcgttcaacaagtcgggcatcaagcccgactggatgatcatggaa
gtgctgcccgtgctgccgccggacttgcgtccgctggttccgctcgacggcggccgcttc
gcgacgtcggacctgaacgacctctatcgtcgcgtgatcaaccgcaacaaccgcctcaag
cgcctgctcgagctcaaggctcccgaaatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggcgatgacgggcgccaac
aagcgcgcgctcaagtcgctcgccgacatgatcaagggcaagagcggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcattgtggtcggcccgacg
ctcaagctccaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagcccttc
atcttccacaagctcgaagtgatggggcttgcgacgacgatcaaggcggccaagcgcatg
gtcgagagccaggaaccggtggtctgggacatcctcgaagaggtgatccgcgagcacccg
gtgctgctcaaccgcgcaccgacgctccaccgcctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtttgcgccgcgttcaacgcggac
ttcgacggtgaccagatggcggtccacgtgcccatctcgctcgaagcgcagatggaagcg
cgcacgctcatgctgtcgtccaacaacgtgctccacacggcgcacggcgaaccggtcatc
gtgccgtcgcaggacatcgtgctgggcctgtactacgccacccgcgatcgcgtgaacgcg
cgcggcgagggctcggtgttcaccaacgtcgctgaagtcagccgtgcctacgagtcgggc
ggcgtggagctgcacgcgcgtgtcacggtgcgcatccgcgaggtccttaagaacgaagcg
ggcgagctcaccgaagtggtgaatcgccacgagacgaccgttggtcgctcgctcctgtcg
gaaatcctgccggcgggcctgccgttcgcgatcatcaacaaggcgctcaagaagaaggaa
atctcgaagctcatcaacgaggcgttccgccgctgcggcatccgcgaaacggtgatcttc
gccgacaagctgatgtacacgggcttcacctacgccacgcgcgccggcctatcgatctgc
gtcgacgacctgctcatcccttcgcagaaggcgagcatcatcgacaagagcgaagaggaa
gtgaaggaaatcgagcgccagtacacctcgggtctcgtgacccagggcgagcgctacaac
aaggtggtcgacatctggggccgcgccggcgaccagatcgccaaggcgatgatggaccag
ctcggcagcgagaaggtcatcgatcgcaagggcaaggaagtctcgcaggagtcgttcaac
gcgatctacatgatggccgattcgggcgcgcgtggttccgcggcgcagattcgccagctg
gccggcatgcgcggcctgatggcgaagccggacggctcgatcatcgagacgccgatcacg
gcgaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacgcacggcgcccgc
aagggtcttgccgatacggcgctgaagaccgcgaactccggctacctcacgcgccgcctg
gtcgacgtcacccaggatctcgtggtggtggaagacgattgcggcacggtcaccggcatg
gacatgaaggcgctggtcgaaggcggcgaagtggtcgagccgctgcgcgagcgcattctg
ggccgcgtcgtcgcgaccgacgtgctcaatccggagggccacgaggttgtggtcgccgcg
ggcacgccgctggacgaggatatggttgagcgcatcgagtcgctgggcatcgacgaagtc
aaggtgcgcacgccgctcacatgcgatacgcgtttcggcatctgcgcgcgctgctacggc
cgcgacctgggccgtggctcgctcgtgaacgtcggcgaggctgtcggcgtcatcgccgcg
cagtcgatcggcgaaccgggcacgcagctcacgatgcgcacgttccacatcggtggcgcg
gcttcgcgtaccgcggtggcgagctccgtcgaagcgaagtcgaacggcctggcgcagttc
tcggccacgatgcgctacatcaccaactcgcgtgaggaacagatcgcgatttcgcgcagc
ggcgagatcatcatcgccgacgacagcggccgcgagcgcgagcgccacaaggttccctat
ggcgcgacgctcacggtgaaggacggcgcgaaggtgaaggccggccagtcgctctccaat
tgggatccgctcacgcgccccatcatcaccgagtacgcgggcgagacgaagttcgacaac
gtcgaggaaggcgtcaccgtggccaagcagatcgacgagaccacgggcctttcgagcctg
gtcgtgatcgatccgaagcgccgcggcacgtcggctaccaagggcctgcgcccggcggtg
aagctgatcggcgacaagggcaaggaagtgaagcttgccacgggtgataccccggtgaac
tacacgttccagatcggcgcgatcatcacggtcaagaacggccagcaggtgaacgtgggc
gacgtgctcgcgcgtatcccgcaggagtcgtccaagacccgcgacatcacgggcggcctg
ccgcgcgtggccgagctcttcgaagcgcgctcgccgaaggatgcgggcctgctcgcggag
atcaccggcacggtttcgttcggcaaggacacgaagggcaagcagcgcctgatcatcacg
gacgtcgatggcgccgcccacgagtacctgatcccgaaggaaaagcacgtcaccgtgcac
gacggccaggtggtcaacaagggcgagacgatcgtcgacggcccggcggatccgcacgac
atccttcgcctccaggggatggaagcgctcgcgcgctacatcatcgacgaggtgcaggac
gtctaccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcgttcgccag
atgctccgccgggtccagatcacggatccgggcgacacccgcttcattgtgggcgagcag
gtcgagcgtgccgactacctcggcgagaacgaccgggccaggaacgacggcaagaagccg
gcccagttcgagtacatgctgctcggcatcaccaaggcgtccctgtcgaccgactcgttc
atctcggcggcctccttccaggagaccacccgggtgctcaccgaggcggccatcatgggc
aagaaggacgacctgcgcggcctcaaggagaacgtcatcgtcggtcgcctcatcccggcg
ggcacgggcctggcctaccactcgacccggaagaagaaggaagtcgagccgggcgccagc
gcttcgttcggctttgccctggacgagtctgacgttggtagcgagcaggttgcttga
DBGET
integrated database retrieval system
