Usitatibacter palustris: DSM104440_03720
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Entry
DSM104440_03720 CDS
T06995
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
upl
Usitatibacter palustris
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
upl03016
]
DSM104440_03720 (rnb)
Enzymes [BR:
upl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSM104440_03720 (rnb)
Transfer RNA biogenesis [BR:
upl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSM104440_03720 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QJR16884
UniProt:
A0A6M4HE44
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All DBs
Position
complement(3859100..3860980)
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AA seq
626 aa
AA seq
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MGHHVKQVLFDEDGTFRLGTILSEAGASFQVEAAHGKRSKVKAASILLRFDGQSLVAMMP
EAQKLSEDIDPQFLWEVCGPDEFGFGDLAREYFGHAPSPTEATAVALKLQSSPVFFYKRG
KGRFQAAAEENLKAALAGIEKKKRQQEQVDQWAADLAAGRVPEKVAANLDTLLFKPDKMS
LEWRALDQAATAAGLAPPKLLAQAGALKGAEDFLLRRFKFEYFPEGTGFAMMPPLADPGE
LPEAQAEAFSIDDHETTEIDDAFSVQRLAADRVRIGIHIAAPSLFFGRDHPLEALARERL
STAYFPGAKITMLPENAVEQSTLAAGRRVPAATLYLTVDPGTLEIIESQSALERVQIASN
LRISDLETRLNDAAVAAGRVEGEHGEDLLLLWRFAMKLRAARGAADDKNARLDYTFRITG
ERIALEPRRRDTPIDLLVSELMIHVNSTWGKWLAERGYVAMYRNQRGIKTRMEVEPAAHE
WLGVSHYAWSSSPLRRFADLANQRQLVASLRGDEPVYTKDELSLAARDFETTYEAYAEHQ
RTLERFWCLRYIAQESLGEADATVIRDELVRLEGIPLVCRVVGLPAATVPGTRVRVAFGE
PDYWDPSVLCRYLGTISAHAVAATPT
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgggccaccacgtgaagcaagtcctgttcgacgaagacggtaccttccggctcgggacg
atcctttccgaggcgggcgcgtcctttcaagtggaagccgcgcacggcaagcgctcgaaa
gtgaaggcggccagcatcctccttcggttcgacggccagtcgctcgtggcgatgatgccc
gaggcgcagaagctttccgaggacatcgacccgcaattcctgtgggaggtgtgcgggcct
gacgagttcggtttcggcgacctcgcgcgcgagtatttcggtcacgcgccttcgcccacc
gaggcgacggcggtcgcgttgaagctccaatcgagccccgtgttcttctacaagcgcggc
aagggtcgcttccaggccgcggccgaggagaacctgaaggccgcgctcgcgggcatcgag
aagaagaagagacagcaggagcaggtcgaccagtgggcggccgacctcgccgccggccgc
gtgcccgagaaggtcgcggcgaatctcgacacgctgctcttcaagcccgacaagatgtcg
ctcgagtggcgcgccctcgaccaggcggccaccgccgcgggcctcgcaccgccgaagctt
ctcgcccaagcgggtgcgctgaagggcgcggaggatttcctcctgcggcgcttcaagttc
gaatacttccccgagggcacgggattcgcgatgatgccgcccctggccgatcccggtgag
ctgcccgaggcgcaggcggaagcgttttccatcgacgatcacgagacgaccgagatcgac
gatgcgttctcggtgcagcgcctcgcggccgatcgcgtgcgcatcggcatccacatcgct
gcgccctcactcttcttcggtcgcgaccacccgttggaggcgctcgcccgcgaacggttg
tccacggcgtactttcccggcgcgaagatcacgatgcttcccgagaacgcggtcgagcag
tcgacgctcgcggccggccggcgcgttcccgccgccaccctctacctcacggtcgatccg
ggaacgctggagatcatcgaatcgcaatcggcgctggaacgcgtgcagatcgcgagcaac
ctgcgcatttccgacctcgagacgcggctcaacgacgcggcggtcgcggccggtcgtgtc
gagggcgagcacggcgaggacctgctgctcctttggcgcttcgcgatgaagctgcgcgcc
gcgcgcggtgccgcggacgacaagaacgcgcgcctcgactacacgttccgcatcaccggc
gagcgcatcgccctcgagccacgccggcgcgatacacccatcgacctgctggtctcggag
ctgatgatccacgtgaattccacgtgggggaaatggctcgcggagcgcggttacgtcgcg
atgtaccgcaaccagcgcggcatcaagacgcggatggaggtcgaacccgcggctcacgag
tggctgggtgtctcccattacgcgtggtcgagctcgccgctgcgccgctttgccgacctc
gcgaaccagcggcagttggtggcgtcgctccgcggcgacgagccggtgtacaccaaggac
gaactctcgctggcggcgcgcgatttcgaaacgacctatgaggcctatgccgagcaccag
cgaacgctcgagcgcttctggtgcctgcgctacatcgcgcaggagagccttggggaggca
gacgccaccgtgattcgcgacgaattggtgcggctcgagggcattccgctcgtctgccgc
gtcgtgggattgcccgctgccaccgttccgggaacgcgcgttcgcgtggcgttcggagaa
cccgattactgggacccctcggtactttgccggtacctaggtacaatttcggctcatgca
gttgcggcaacccccacctga
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