Ureaplasma parvum serovar 3 SV3F4: UP3_c0235
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Entry
UP3_c0235 CDS
T03673
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
upr
Ureaplasma parvum serovar 3 SV3F4
Pathway
upr03420
Nucleotide excision repair
upr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
upr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UP3_c0235
03430 Mismatch repair
UP3_c0235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upr03400
]
UP3_c0235
Enzymes [BR:
upr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UP3_c0235
DNA repair and recombination proteins [BR:
upr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UP3_c0235
MMR (mismatch excision repair)
Other MMR factors
UP3_c0235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
BAO73542
LinkDB
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Position
303414..305645
Genome browser
AA seq
743 aa
AA seq
DB search
MGLGIDYSRLNQEQKEAVTADLGPQLVIAGAGTGKTSVLTLRIAYLITEKNIHPSRILGF
TFTNKAADEMKERVGKTIGVSIPYLSTFHSMCVKILQQDIHYLNYNNNIKIIDTDDQEVL
LKEIFDQLNIEKKSQVIKKIIKTISKVKNKFFDQNDMLNEKNHKYLELVDLNDAQRLVDI
YKIYCDRCFKLNYVDFDDLINLTHKLFIEFPEVLEKWQNKFDYILVDEFQDTNKIQYDLI
SLLATKHQNLFVVGDPDQMIYSFRGAEQWIINNFSQNFKNTKVTILKTNYRSTQPILNTA
NRLIDANNNNYKKNLTAFNTNDNNLPIYLRGQNPIDEANWIARKIRELLEEGTPANQIAV
LFRSNHYSRTIEQSMMRESIPYTILGSKKFYERAEIKDMIAYLKVVNDLDELSFLRIINT
PRRAIGPTTFEHVKHYAINNNLFLFEALAEVEKNHLINNTQKKNILNFVNLIKEIRDEME
DLKIHEILELIYKKVNYEAYLLENEKAEDKIDNVYELKRAMKMYVDRHPDDTINDYLNSI
ALYLNKDGKDSKENVLLMTVHNSKGLEYENVFVAGMNEGLLPSDRAINDDPIKGVEEERR
IAYVALTRAKKNLYISSACCYDPLARRQVFESRFINEIGFNNLKIINSSFKNNKPEDMPL
KSFLKQQEERSWFDSKQKQKEVEDNFYQTMKNDFEIGERIVHTSFGDGVIIGIDGDILTI
AFSKYRQPKQINFNHKTIVRRIG
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgggattaggaattgattattcacgcttaaatcaagaacaaaaagaagcagttacagca
gacttaggaccgcaattagtaattgcaggggcagggacaggaaaaacatctgttttaact
ttacgtattgcttatttaattactgaaaaaaatattcatccatcacggattttaggtttt
acttttactaataaggctgctgatgaaatgaaagaacgtgttggaaaaacaattggcgtt
tctattccttatttaagtacttttcattcaatgtgtgtaaaaattttacaacaagatatt
cattatttaaattataataacaatattaaaattattgatacagacgatcaagaagttttg
cttaaagaaatttttgatcaattaaacattgaaaaaaaatcgcaagttattaagaaaata
attaaaacgattagtaaagttaaaaataaattttttgatcaaaacgatatgctaaatgaa
aaaaatcacaagtatttagaattggttgatttaaatgatgcacaaagattagttgatatt
tataagatttattgtgatcgatgttttaaattaaattatgttgattttgatgatttgatc
aatttaactcataagttatttattgagtttccagaagttttagaaaaatgacaaaataaa
tttgattatattcttgttgatgaatttcaagatactaataaaattcaatatgatttaatt
agtttattagcaactaaacatcaaaatttatttgtggttggcgaccctgatcaaatgatt
tattcatttagaggtgctgaacaatgaattattaataattttagtcaaaattttaagaat
acaaaagtaacaattttaaaaacaaattatcgttcaactcagccaattttaaatacagct
aatagattaatcgatgctaataacaacaattataaaaaaaatttaactgcttttaatact
aatgacaataatttaccaatttatttacgagggcaaaacccaattgatgaagctaattga
attgctagaaaaattagagaattgttagaagaaggaacgccagctaaccaaatcgctgtt
ttgttccgaagcaatcactattctcgtacgattgaacaatcaatgatgcgcgagagcatt
ccttatacaattcttggcagtaaaaagttttatgaacgtgctgaaattaaggacatgatt
gcttatttaaaagtagttaatgatttagatgaactatcttttttaaggattattaataca
ccacgtcgtgcgattggtccaactacttttgaacatgttaaacattatgcaataaataat
aatttatttttatttgaagcattagctgaagttgaaaaaaaccatttaataaataacaca
caaaaaaagaatattttaaattttgttaatttaattaaagaaatccgtgatgaaatggaa
gatttaaaaattcatgagattttagaattaatttacaaaaaagttaactatgaagcttat
ttattagaaaacgaaaaagcagaagataaaatcgataatgtttatgaattaaaacgcgct
atgaaaatgtatgttgatcgtcatccagatgacacgattaatgattatttaaattcgatt
gctttatatttgaataaggatggtaaagatagtaaagaaaatgttttattaatgacagtt
cataattctaaaggtctagaatatgaaaacgttttcgttgctggtatgaacgaaggactt
cttccttctgatcgagcaattaatgatgatccaattaaaggagttgaagaagaacgaaga
attgcttatgtagccttaacacgagcaaaaaaaaatctttatatttcatctgcttgttgt
tatgatccattagcaagaagacaagtatttgaaagtcgttttattaatgaaattggtttt
aataatttaaagattataaatagtagttttaaaaataataaaccagaggatatgccatta
aaatcattcttaaaacaacaagaagaacgttcatggttcgattcaaaacaaaaacaaaaa
gaagttgaagataatttttatcaaacaatgaaaaacgattttgaaattggtgaaagaatt
gttcacacaagttttggtgatggtgttattattggaattgatggtgatatcttaacaatt
gctttcagtaaatatcgtcaaccaaaacaaattaattttaatcataaaacaatcgtaaga
agaataggttaa
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