Undibacterium parvum: EJN92_00340
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Entry
EJN92_00340 CDS
T05754
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
upv
Undibacterium parvum
Pathway
upv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJN92_00340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upv03019
]
EJN92_00340
Enzymes [BR:
upv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJN92_00340
Messenger RNA biogenesis [BR:
upv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJN92_00340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZP10615
UniProt:
A0A3Q9BMT2
LinkDB
All DBs
Position
67315..68688
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AA seq
457 aa
AA seq
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MTTFSELGLSECIVRAVSDHGYTTPTPIQMQAIPAVIKGGDLLAGAQTGTGKTAGFTLPI
LERLHKGPNAPKNKTDRRPIRALVLTPTRELAAQVEESVSTYGKYTNLNSGVIFGGVGIN
PQIKLLKTGVDILVATPGRLLDHKQQGTIDLSHVEILILDEADRMLDMGFIHDIKKVLAI
LPPKRQNLLFSATFSDEIKTLADRLLDNPAMIEVARRNSTVEVIAQKIHPVDRDKKHPLL
AHLIKTYNWVQVLVFTRTKHGANKLVEQLIAGGINSMAIHGNKSQSARTKALAEFKDGSL
TVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEFKL
LADIEKLIKRQLPQEIIDGFIPDPHAKAQPIQLRSFQGQGQGQGRSGGGGGGGGGNRAGN
RQARPVGASREGGPARTSAKPVVKQSTPRRSGGRGGA
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaccacattttcagaacttggcttatccgagtgcatcgttcgcgcagtcagcgatcat
ggttacaccacccctacgccgatacaaatgcaggcgattcctgcagtgattaaaggcggg
gatttactggctggcgcgcagaccggcaccggaaaaaccgcaggcttcacgctgcctatc
ctagagcgcttgcacaaaggtccgaacgcaccaaaaaacaaaaccgatcgccgccctatc
cgtgccttggtcctgacaccgacacgcgaactggcggcacaggtagaagaaagcgtcagc
acttacggtaaatacaccaaccttaattccggtgttattttcggcggtgtcggtatcaat
ccacaaattaaattactcaagactggcgtcgatattttggtcgcaacgccgggtcgttta
ttggatcacaagcagcaaggcacgatagatcttagccacgtcgaaattttaatcctggac
gaagccgatcgcatgttagacatgggcttcatccacgacataaaaaaagtcctggcaatc
ttgccgcctaagcgccagaacctgctgttctctgcgactttttcagatgagatcaagact
ctcgccgatcgactgctggataatccggcaatgatagaagtggcgcgtcgcaactccacc
gtcgaagtcattgctcaaaaaatacatccggtagaccgtgacaagaagcaccctttattg
gcgcatctgatcaagacctacaactgggttcaagttttggtatttacccgtaccaaacac
ggtgccaataagctcgtagagcaattgatcgccggtggcattaacagtatggcgatccac
ggcaacaagagccagtcggcacgcaccaaggcgctggccgaattcaaagacggcagcctg
acggtcctggttgccaccgacatcgctgcgcgcggtatcgatattgatcaattgccgcac
gtcgtgaactacgatttgcccaacgttccggaagattatgtacaccgtatcggccgtact
ggtcgcgctggtgcaactggcgaggcggtttctctggtctgcgtggatgaattcaagcta
cttgccgacatcgagaaactgatcaagcgtcagctaccacaagaaatcatcgatggtttc
attcctgatcctcacgccaaagcgcaacctatacaattgcgtagtttccaaggtcaggga
caaggtcaaggccgcagtggtggtggtggcggtggtggtggcggcaatcgtgccggcaat
cgccaggcacgcccggtaggcgcatcacgcgaaggcggtccagcacgcacttcagccaaa
ccagtggtcaagcaaagtacaccacgtcgttccggtggacgcggcggcgcataa
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