Undibacterium parvum: EJN92_07810
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Entry
EJN92_07810 CDS
T05754
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
upv
Undibacterium parvum
Pathway
upv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJN92_07810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upv03019
]
EJN92_07810
03009 Ribosome biogenesis [BR:
upv03009
]
EJN92_07810
Enzymes [BR:
upv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJN92_07810
Messenger RNA biogenesis [BR:
upv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJN92_07810
Ribosome biogenesis [BR:
upv03009
]
Prokaryotic type
rRNA helicases
EJN92_07810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AZP11917
UniProt:
A0A3Q9BQ98
LinkDB
All DBs
Position
complement(1806637..1808937)
Genome browser
AA seq
766 aa
AA seq
DB search
MSETNPLFTDLNLSEPLIRALKDVGYESPSPIQAATIPVLLENRDVLGQAQTGTGKTAAF
ALPILSRIDIRQTAPQALVLAPTRELAIQVAEAFQTYAKHIPGFHVLPIYGGQSYGPQLS
ALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILKDTPEN
RQVALFSATMPSAIKRIAQTYLNKPAEITVAAKTGTADNIRQRYWLVSGMHKLDALTRIL
EAETFDGMIIFARTKLGTEELAGKLSARGFSVAAINGDIQQQQRERTIQQLKDGKIDILV
ATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKAI
ERATRQPISPLELPSIQAVNDVRIARFKDQITETLAQGELEQFLAIIEDYEREKNVPAFE
IAAALAKMARGSEPLLLDKNKREVKSDDSWRDEQPARNTRTERGDRPARGERSDRFDRGD
RPEREERGQRREHSPRTAEPGMRTFRIAVGHEHGVKPGNIVGAIANEANIDSKFIGRIDI
YDDYTVLDLPDSLPQDMMEHLKSVRVAGQALNIRADGASGSAPAASFSKAPAAAASKLTK
VVERAARFPGEEEAPAKSEKKRLENKGKVQIPMLSYRIEVGREHAVTPSNIVGAIANEAG
LEAKHIGKIAIFDDYTTLELPDGMPPEVLTHLKGVWVANRQLKISPVAAGSVNTDKPAKF
SAPSAFGERKAGGDRRVQEKSAPHAKKDGVKRPFKADGAGNKPPRK
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccaatcccctatttaccgatcttaatctcagcgagccgcttatccgcgcc
ctgaaagatgtcggttacgaatccccgtcgcctattcaagccgccactattcctgtcttg
ctggaaaaccgtgacgtgctcggccaagcgcaaaccggtaccggtaaaaccgctgcgttt
gccctgcctattctgtcccgcatagatatccgccagactgcaccgcaagcattggtgttg
gctccaacgcgtgaactggcgatccaggtcgcggaagctttccagacttatgccaagcat
attcctggtttccacgtcttgccaatttacggtggccagagctacggtccgcaattgtcg
gccttgcgccgtggcgtgcatgtggtagtcggtacgccgggtcgcgtgattgatcatctg
gacaaggggtcgctggatttatccaagctgaaaaccctggtgctggacgaagccgatgaa
atgctgcgtatgggctttatcgatgacgtagaacgcatcttgaaagacacgccggaaaac
cgtcaggtggccttattctcggccacgatgccgtccgccatcaagcgcatcgcccagact
tatctgaacaagccagccgagattaccgttgcggccaagaccggtactgccgacaatatc
cgtcagcgttactggttggtgtccggcatgcacaagctcgatgccctgacacgtattctg
gaagcagaaacttttgacggcatgatcatttttgcccgcaccaagttgggtaccgaagag
ctggctggcaaactttcggcaagaggcttctcggtagcggcgattaacggcgatatccag
cagcaacagcgcgagcgcaccattcagcaactgaaagacggcaagatcgatattctggtc
gctaccgacgtcgctgcccgtggtctggatgtggagcgcatcagtcacgtggtcaactac
gatgtaccgcatgatccggaaagctatactcaccgtatcggtcgtaccggccgtgccggt
cgtagcggcgaagcgattttgtttatcactccgcgtgaaaaaaatctgctgaaagccatc
gaacgcgcaacgcgtcaaccgatttccccattggaattgccgtctatacaagcggtgaat
gacgtgcgtatcgcgcgcttcaaggatcagattaccgagactctggcgcaaggcgaactc
gagcagttcctggcgatcattgaagattacgagcgcgaaaaaaatgtcccggcgtttgaa
attgcagcggcgctggcgaaaatggcgcgtggttccgagcctttgctgctcgacaaaaac
aagcgtgaagtaaagagcgacgatagctggcgcgatgagcaaccggcacgcaatacccgc
accgagcgcggcgatcgccctgcccgtggagagcgtagcgacagatttgatcgtggcgac
cgccctgagcgcgaagagcgcggtcaacgtcgtgagcatagcccacgcacggctgagcct
ggtatgcgcactttccgtatcgcggtagggcatgagcatggtgttaagcctggcaatatc
gtcggcgcgatcgccaacgaagccaatatcgactctaagtttatcggtcgcatcgatatc
tatgacgattacaccgtgctcgatttgccagacagtctgccacaagacatgatggaacat
ctcaaatcggtgcgggtagctggtcaggcattgaacatccgtgctgatggcgccagcggt
tctgcaccagcggcgagtttcagcaaagcacctgctgctgcagcgagcaagctgaccaag
gtggtcgagcgtgctgctcgcttccctggcgaagaagaggcaccggccaagtctgagaaa
aaacgcctggaaaataaaggcaaagtgcagattcctatgctcagttaccgcatagaagtg
ggccgcgagcacgccgttacaccgagcaatatcgtcggtgcgattgccaatgaagccggt
ctggaagccaagcatatcggcaagatcgctatttttgacgactacaccacgctggaactg
cctgatggcatgccgcctgaagtactaacacacctgaaaggcgtgtgggtggcgaatcgc
caactgaagatcagcccggtcgcggcaggtagcgtaaatactgataaaccagccaagttc
tccgcgccctccgcttttggcgagagaaaagccggtggcgatcgtcgcgtgcaagaaaaa
tcggcaccacatgctaaaaaagacggcgtaaaacgtccgttcaaagcagatggtgcaggt
aataaaccacctcgtaagtaa
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