Undibacterium parvum: EJN92_17230
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Entry
EJN92_17230 CDS
T05754
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
upv
Undibacterium parvum
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
upv03009
]
EJN92_17230 (rlmD)
Enzymes [BR:
upv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EJN92_17230 (rlmD)
Ribosome biogenesis [BR:
upv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EJN92_17230 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
TRAM
MTS
Methyltransf_32
UPF0020
Methyltr_RsmB-F
Methyltransf_23
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
AZP13576
UniProt:
A0A3Q9BU77
LinkDB
All DBs
Position
3935965..3937299
Genome browser
AA seq
444 aa
AA seq
DB search
MNKINIRSFDMDARGVGHLENEDGTPGKVIFVEGALPGEVVSFNTFKKKASWEAANMGTL
FKESSQRVTPKCEYFGVCGGCSMQHLDANAQVAMKQRVLEDNLGHIGKVKPDMMMRPIYG
PTWGYRYRARLSVRNVVKKGTVLVGFHEKKSRFVANMERCEILPPHVSAMLLPLRGLIAS
LSILEEVPQIELAIGEGVTALVLRIMAALSAEDELKLKAFADEYKVQWWLQTKGPETAEP
FYPATSDLHYLLPEFGVKMPFKPTDFTQVNHHINRVLVDRALRLLDVQKDERIADLFCGL
GNFTLPIATLAKEVVGIEGSTSLTERALENAIANGLQDKTSFSTRNLFEVTAEDLVALGK
FDRYLVDPPRDGAMALCQALIDLGKFAPHLKPKRIVYVSCSPGTLARDAGMLVNLGGYRM
TKAGVVNMFPHTSHVESMAVFDLI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaattaatatccgctcctttgatatggatgcgcgtggcgttggtcatctcgag
aacgaagacggcactccgggtaaggtgatttttgttgaaggcgcattgcctggggaagtg
gtgagttttaacactttcaagaaaaaagccagctgggaagccgccaatatgggcaccctg
ttcaaagagtcatcccaaagagtgacgcctaaatgcgagtattttggggtgtgcggcggt
tgttctatgcaacatctggatgctaatgcccaggtcgccatgaagcagcgcgtgctggaa
gataatcttggacacatcggcaaagtcaagccagatatgatgatgcgccctatctacgga
ccgacctggggttaccgttatcgcgcccgtttgtcggtgcgcaatgtcgtcaaaaaaggc
acggtgctggtgggttttcatgagaagaaatcccgttttgtggcgaatatggagcgctgc
gaaattttgccgccgcatgtttcggccatgctgctgcctttgcgtggcttgattgcctcg
ctttctatcctggaagaagtgccacaaattgaattggcgatcggtgagggcgtcaccgcc
ttggtactgcgcatcatggcggccttaagtgcggaagacgaactcaagctaaaagccttc
gccgatgaatataaagtgcaatggtggttgcaaaccaagggcccggaaactgcagagcca
ttttatccggcgaccagtgatttgcattatctgctgccggaatttggcgtcaaaatgccg
tttaagcctaccgactttacccaggtaaatcatcacatcaatcgagtcttggtggataga
gcactgcgtttattggacgtgcaaaaagacgagcgtatcgccgatttgttttgtggcctg
ggtaactttaccttgcctatcgccacccttgccaaagaggtggtggggatagagggtagt
accagtctgactgaacgtgcgcttgaaaacgccatcgccaatggtttgcaggacaagacc
tcatttagcacccgcaatttatttgaagtgactgccgaagatctggtcgcactagggaag
tttgatcgttatctggtcgatcctccgcgcgatggcgcgatggcactgtgccaggccttg
atcgatctgggtaagtttgcgccgcacttgaaacctaagcgtatcgtctacgtttcgtgt
agcccgggaacgctggccagagatgctggcatgttggtgaatcttggcggttatcgcatg
accaaggcgggcgtggtgaacatgttcccacatacctctcatgttgaatcgatggcggtg
tttgatttgatttga
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