Undibacterium parvum: EJN92_19330
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Entry
EJN92_19330 CDS
T05754
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
upv
Undibacterium parvum
Pathway
upv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EJN92_19330 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upv03400
]
EJN92_19330 (recB)
Enzymes [BR:
upv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EJN92_19330 (recB)
DNA repair and recombination proteins [BR:
upv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EJN92_19330 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AZP13956
UniProt:
A0A3S9HPB6
LinkDB
All DBs
Position
complement(4424768..4428532)
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AA seq
1254 aa
AA seq
DB search
MNNHQQQLNQANGSQVLDALHFPLHGSRLIEASAGTGKTWTIAALYLRLVLGHGSELGDE
LGTNSAFPRALLPSEILVMTFTRAATRELSHRIRERLVHAAKCFRGALPDRKDVFLCELI
AAYTSEQARLQAAHRLMLAAESMDDAAIFTIDAWCQRMLREHAFDSGSLFDEELLSDETA
LLEDAVRDYWRQQVYQLDTQTLAVLRSYWNEVSALENAIRPLVGKSELLGAVPKETLAQL
IHRVQSEQGAILGELKQGWLERAQDMQAWIEAQQTATPKCFSGVKLKTATVQAWFASLRE
WAQDPLALMPDAFDKAWTRLTPDGIVDACNKGHSVVVPEVFGLLSALKAELGKIEPIKFA
LIRHAAHAIAARVATLKQSKRQFGFADMLTRLRLALTGDNAAALRARIVAQYPLAMIDEF
QDTSPEQYQIFDALYQVAQNRPELGLFLIGDPKQSIYGFRGADINSYLAARLATSGRHYL
LGTNYRSSVALVQAVNQLFLYAEGDSEHSGFSSGAFKFRSETDNPLPFEPVASQGRNESL
VDSQGALNALTLWSSAESDLNKNDYYQLFANICAEQIVNLLNDTQAGFQTVVDGVPSFTR
LQAADIAILVRDRNEAAAIRRALQKRQIASVYLSDKDSVIRSEEAADVLRWLRAVSNPLD
NALGRAAFATATAGLTLATLASHVDDDMLWEQRIEQLKSLHTLWQRQGILAMLRRFIHDL
GLPARLLQQAGGERRLTNLLHLAELLQSVSQKLDGEQAVIRWLAEQIENESEGGDERVLR
LESDAELVKVVTVHKSKGLEYPLVFLPFAVSARPASTRNRSFLEYVDEHGAPHIDLALSN
DALAQVEAARLEEDLRLLYVALTRARHALWLGVASLKNKIHDSALGYLIAGGRALAAADL
KDELAKLRGDCAAIAILPIATLEQGCPLSMLAQLDQKPALIDAPVFSASFERDWSVSSFT
ALTKAMSATNKPVLASHAQEEKLLENPDLELQNTLLIGALIRTPFSPTQDSAWHQFPRGP
LPGQFLHEQLEWMGLEGFDIVHHASFTQRLGERCERAGWGHRQAESALWLQAIANTRLPA
LAATLCDFELDHTLPEMEFWFPSEHFATSELDQLCQSHLLAGIARPALPERQLHGMLKGY
ADLVFEHQGRYWVLDYKSNHLGDDDASYHHDALAGAMAQHRYDVQGSIYLLALHRLLKSR
LGAHYDPDTQLGGAIFFFLRGIHNSQTHGCYQLPANSSLLDALDNLFITESASL
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcaccagcagcaactaaatcaagccaacggcagccaagtgctggacgcgctg
cattttccactgcatggttcgcgcctgatagaggccagcgcgggtaccggcaagacctgg
accatcgccgccctgtatctgcgcctggtgctcgggcatggcagcgaacttggggacgag
cttggaacgaacagcgcattcccacgcgccctactcccttcagaaattctggtgatgacc
ttcacccgcgccgccacccgcgaactgtcgcatcgtatccgtgagcggctggtgcatgcg
gcaaaatgttttcgcggtgcgctgcccgatcgcaaagatgtgtttctgtgcgaattgata
gcggcctatacctcggagcaagcgcgactgcaagcggcgcaccgtctgatgttggcagcc
gagagtatggatgatgccgccatcttcacgatagacgcctggtgccagcgcatgttgcgc
gaacatgcgtttgatagcggcagcttgtttgatgaagaattactcagtgatgaaactgct
ctgttagaagatgcagtgcgcgattattggcggcaacaggtctaccaactcgatacccag
accttagcggtgctgcgcagttactggaatgaagtgagcgcattagaaaatgccatacgt
cctttggtgggtaagagcgagttactaggagctgtgccgaaagagactttggctcagcta
attcatcgcgtgcaaagtgaacaaggcgcgatcttgggcgaactaaagcaaggctggtta
gaacgcgcgcaagacatgcaggcatggatagaagcgcagcaaactgcgacgcccaagtgt
tttagcggcgtcaagctcaaaacggcaacggtgcaagcctggttcgcctctttacgggaa
tgggcgcaagatccgctggccctgatgccagacgcgtttgataaagcctggactcgcctc
actcctgatggcatcgttgacgcctgcaacaaggggcatagcgtagtggtaccggaagtt
ttcggtctgctaagcgcattaaaggccgagctaggcaaaattgaacctattaagtttgcc
ttgatacgccatgctgcccacgcaattgcggcgcgagtcgccacgctcaagcaaagtaaa
cgccagtttggctttgccgatatgctgacgcgcttacgtctggcactcacaggtgacaat
gccgcggcgctgcgtgcgcgtatcgtggcgcaatatccactggccatgatcgatgagttt
caagatacctcgcccgagcaataccaaatttttgatgcactgtaccaggttgcacaaaac
cgcccggaattggggctgtttttgatcggtgatcctaagcaatcgatttatggatttcgc
ggtgccgacatcaatagttatctggcggcgcgtctggccactagcggcagacattatttg
ctcggcacgaattaccgttctagcgtggctttggtgcaggccgtgaatcaactgtttttg
tatgccgaaggcgatagcgagcacagcggctttagctctggtgctttcaagtttcgtagc
gagaccgataatccgctgccgtttgagcctgtcgctagccagggtcgcaacgaaagctta
gtcgatagccagggcgcgctgaacgccctgacgctttggtctagcgccgaatctgatctg
aataagaatgactactaccagttgtttgctaatatttgcgctgaacagatcgtcaaccta
ctcaacgatacgcaggctggctttcagactgtggtggatggtgttccaagttttacgcgt
ctgcaggcggccgacattgcgatcctggtacgcgaccgcaatgaggctgcggccatccgc
cgtgccttgcaaaaacgtcagatcgccagcgtctacttatccgacaaagattcagtgata
cgaagtgaagaagccgccgatgtcttgcgctggttacgcgcagtctcgaatcccttagat
aatgctctgggacgtgccgcctttgccaccgccaccgcagggctgacactggcgacgctg
gccagccacgtcgatgacgatatgctgtgggagcaaagaatagaacaactaaagagcttg
cacaccctgtggcaacgtcagggcatcctggcgatgctcagacgtttcattcacgatcta
ggcttgccagcacgcttattgcaacaagccggtggcgaacgccgcttgactaatctactg
cacctggccgagctattgcaaagcgtcagtcaaaaactcgatggtgaacaagcagtgata
cgctggctggcagagcagattgagaatgagagtgaaggcggtgacgaaagggtattacgt
ttagagagcgatgccgagttggtcaaggtggttaccgtgcacaaatccaaagggctggaa
tatcctctggtatttttgcctttcgcggtcagcgcccgtccggctagcacccgcaatcgc
agctttttagaatatgtcgatgagcacggcgcacctcacatagatctggctttaagcaat
gatgccctggcgcaggtggaggcggcccgtctcgaagaagatctgcgtctcctgtacgtg
gcactcacccgcgcacgccatgccttatggctaggcgtcgcttcgctcaaaaacaagatt
catgattctgctttgggttatctgattgctggtggtagagctctcgctgcggcggattta
aaggatgagctggctaaattgcgcggcgattgcgcagcgatcgctatcttgcctatcgca
acactggagcaaggctgtccgctcagcatgctggcgcaactcgatcaaaaacctgctctt
atcgacgcacccgtatttagcgccagctttgaacgcgattggtcagtcagcagttttacc
gcgctcaccaaggcgatgtccgccaccaacaagcctgtgctcgccagccatgcgcaggaa
gaaaaactcttagaaaatcctgacttagagcttcaaaatacgctcctgattggcgcgctg
attcgcacgccatttagccccacgcaagactcggcctggcatcaattcccacgcggccca
ctacctggacaatttttgcatgaacaactggaatggatgggattggaaggctttgacatc
gttcatcacgccagttttacccagcgactaggcgagcgttgtgaacgtgcgggctggggc
cataggcaagcggagagcgcgctctggctacaagcaattgccaacacccgcttacccgca
ctcgcagccacactgtgcgatttcgagttagaccataccctgcccgagatggaattctgg
ttccctagcgagcatttcgccaccagtgagctagaccaactctgccaaagccatttacta
gccggcattgcgcgccctgccctgccagagcggcaactgcacggcatgctcaagggctat
gccgatctggtgtttgaacatcagggccgctactgggtgctcgattacaaatcaaaccac
ctcggtgacgacgatgccagttatcaccacgatgctttggcaggcgcgatggcccagcat
cgctatgatgtgcaaggatccatctatctactggcgctgcataggctgctaaagagccgt
cttggtgcgcactatgatccagacacccaactcggtggcgcgatcttctttttcttgcgc
ggcatacacaatagccagacgcatggttgttaccagttgccagccaacagcagcctgctg
gacgctctcgacaatttatttattacagaaagcgcgagtctatga
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