Undibacterium parvum: EJN92_21195
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Entry
EJN92_21195 CDS
T05754
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
upv
Undibacterium parvum
Pathway
upv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EJN92_21195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upv03019
]
EJN92_21195
03009 Ribosome biogenesis [BR:
upv03009
]
EJN92_21195
Messenger RNA biogenesis [BR:
upv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJN92_21195
Ribosome biogenesis [BR:
upv03009
]
Eukaryotic type
Pre-60S particles
RNases
EJN92_21195
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
AZP14293
UniProt:
A0A3S9HQ97
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All DBs
Position
complement(4867412..4867999)
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AA seq
195 aa
AA seq
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MSQATEIQASTSKPAKPNEMNLIWVDMEMTGLDPDKDVIIEVAVVVTDMQLNVIAEGPVF
AIHQADEIMDKMDAWNKGTHGRSGLIERVKTSTVTEADAEKALIEFLKLHVPNGKSPMCG
NTICQDRRFMARGMPKLEAFFHYRNLDVSTLKELCRRWKPELLSGFKKHQKHTAMADIIE
SIEELKYYREHFIKE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagcgaccgagatacaagcaagtacgtcgaaaccagccaagccaaatgaaatg
aatttgatctgggtcgatatggaaatgaccggtttagacccggataaggatgtgattatc
gaagttgcggtggtggtaaccgatatgcagttgaacgtgattgccgaaggtccggtattt
gcgattcatcaagccgatgaaatcatggacaagatggatgcctggaataagggcacgcat
ggtcgctctggtttgatagaaagagttaaaacctctaccgtgaccgaagccgatgccgag
aaagccttgatagaatttttgaagttgcatgtgcctaacggtaaatcgcctatgtgtggt
aacaccatttgccaggatagacgtttcatggcgcgcggcatgcctaagctggaagcgttt
tttcactaccgcaatctagatgtgtcgacgctgaaagagttgtgccgtcgatggaagcct
gaacttttaagcggcttcaaaaaacatcaaaaacataccgccatggcagacatcatagaa
tctatcgaagagctgaaatactaccgcgagcatttcatcaaggaataa
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