Undibacterium parvum: EJN92_21270
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Entry
EJN92_21270 CDS
T05754
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
upv
Undibacterium parvum
Pathway
upv03410
Base excision repair
upv03430
Mismatch repair
upv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
upv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EJN92_21270 (recJ)
03430 Mismatch repair
EJN92_21270 (recJ)
03440 Homologous recombination
EJN92_21270 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upv03400
]
EJN92_21270 (recJ)
DNA repair and recombination proteins [BR:
upv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EJN92_21270 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EJN92_21270 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJN92_21270 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AZP14307
UniProt:
A0A3Q9BTS3
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All DBs
Position
4883093..4884781
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AA seq
562 aa
AA seq
DB search
MTRLSIRPYSLKQSETLRQSGLHPVLARLFAARGVADSSELATELPALIAPTALLHIDKA
AVFLADAIAANKKMVIVADYDCDGATACAVGLRGLRMLGALVDYIVPNRFEYGYGLTPEI
VALTAREKSPDIIVTVDNGIASIDGVAAANAMGIQVVITDHHLPADSLPDAAVIVNPNQP
ACGFPSKNLAGVGVMFYVLLALRAELRKRGVFDSQSQPKLDVLLDLVALGTVADVVKLDP
NNRILVAQGLKRMRSGRMHAGVAALFRVAGRDSHKASPFDLGFAVGPRLNAAGRLADMAL
GIECLTTDDEGRAWQIAQELNSINADRKDIERDMQDAALLHLDDFQAAASHTISVFDESW
HQGVIGIVASRLKDKFFRPTITFAPGDAGLMKGSGRSIPGFHLRDALDLVSKHSPTLIQK
FGGHAMAAGLTIRSEDFPAFQKAFEAVGQSWLKQEQLERIIETDGALEDAYFTTDFIDLL
AAQVWGQGFAAPVFCDDFKLISQRILKERHLKMVLEKNGLRYDAIWFGHTDSFGDKVKVA
FRLDVNEYNGVTKVQLLVEHVE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacacgccttagcatacgcccctactcactcaaacaatctgagactctgcgccaaagc
ggcctacatccagtcttggcgcgcctgttcgcggcgcgcggggtcgccgacagcagcgaa
ctggcaactgaactaccggccttgatagcaccgaccgccttgctgcacatagacaaagcc
gccgtgtttttggccgacgccatcgccgccaacaaaaaaatggtgatcgtggctgattac
gattgtgacggtgccacggcctgcgcggtgggcttgcgtggtttgcgcatgctaggcgcg
ctggtcgattacattgtgcctaaccgttttgaatacggctacgggctaacgccagagatc
gtggcattgaccgccagagaaaaatcgcccgacatcatcgtcacggtcgacaatggcatc
gccagcatcgatggtgtggcagcggccaatgcgatgggcatacaggtggtgattaccgat
caccatttaccggccgacagcctgcccgacgccgctgtcatcgttaacccgaatcagcca
gcttgcggcttcccaagtaaaaatctggccggtgtcggcgtgatgttttatgtcttgcta
gccctgcgtgccgaactacgcaagcgcggcgtattcgatagccaaagccagcccaagctc
gatgtcttactcgatctggtggcgctgggcactgtggccgacgtggttaagctcgatccg
aataatcgcatactggtggcacaaggtctcaagcgcatgcgcagcggtcgcatgcatgcc
ggagttgccgcgctgtttcgggtggcaggtagagatagccataaagccagcccgtttgat
ctcggctttgcagtcgggccgcgcctcaatgccgccggtagactggccgatatggcgctg
ggcatagaatgtctgaccaccgatgacgagggccgcgcctggcaaattgcgcaagaactc
aatagcatcaacgccgaccgtaaagacatagagcgtgatatgcaagacgcggcgctcttg
catctggatgattttcaagccgcagccagccacaccattagcgtctttgatgagagctgg
catcaaggcgtaataggcatcgttgcctcgcgtttaaaagataaatttttccgccctact
atcactttcgcgcccggcgatgcaggcttaatgaagggttcgggccgctctatacctgga
tttcatctgcgcgatgcgctcgatttagtctccaaacactcccctaccctgatccaaaaa
tttggtgggcacgcgatggcggctggcttgacgatacgaagtgaggactttccggctttc
caaaaagcctttgaagcagttggccagagttggctcaagcaagagcaattagagcgcatc
atagaaaccgatggcgcgctggaagacgcttacttcaccaccgactttatcgatctgctg
gcagcgcaagtatggggccagggctttgccgcgccggtattttgcgacgacttcaaacta
atctcacaacgcatactcaaagagcgccatctaaaaatggtcttggaaaaaaacggcctg
cgttatgacgcgatctggttcggtcacaccgacagtttcggcgacaaggtcaaggtcgca
ttccggcttgatgtgaatgaatacaatggcgtcaccaaggtgcagttattggtggagcat
gtggagtga
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