KEGG   Uncinocarpus reesii: UREG_05838
Entry
UREG_05838        CDS       T01132                                 
Name
(RefSeq) similar to Lsm6 protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ure  Uncinocarpus reesii
Pathway
ure03018  RNA degradation
ure03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ure00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UREG_05838
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UREG_05838
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ure03019]
    UREG_05838
   03041 Spliceosome [BR:ure03041]
    UREG_05838
Messenger RNA biogenesis [BR:ure03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     UREG_05838
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     UREG_05838
Spliceosome [BR:ure03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    UREG_05838
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 8443583
NCBI-ProteinID: XP_002585149
UniProt: C4JTP9
LinkDB
AA seq 144 aa
MDEKGTSEGQDPSAFLSGITGASVTVKLNSGVVYKDGYMNIALEKTQEYIDGKLRNSYGD
VFVRGNNATLYNDRGARYFALVYAPPSLLAYSSSILSWYKRSASSLLSCPSVPVPCSDMP
VADEAIDCDDDWDSDDEELRDDGC
NT seq 435 nt   +upstreamnt  +downstreamnt
atggatgagaaaggaacttccgaaggccaagatccctctgcctttttaagcgggatcact
ggggcttcagtaaccgtgaaattgaattcaggcgttgtctataaagacgggtatatgaat
attgccctggaaaagacgcaagaatatatcgatgggaagctaaggaactcctatggcgat
gtatttgttcggggaaataatgccactttatacaacgatcgcggcgcgagatactttgcg
ctcgtttacgctccaccctctcttttagcgtattcgtcctccatcctctcttggtacaaa
cgatcggcttcctccctgctcagttgcccctctgtccctgtaccgtgctcagacatgcca
gttgcggatgaagcgatagactgcgacgacgattgggactctgatgatgaggagctgcgc
gacgatggttgctga

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