KEGG   Uncinocarpus reesii: UREG_05971
Entry
UREG_05971        CDS       T01132                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ure  Uncinocarpus reesii
Pathway
ure03013  Nucleocytoplasmic transport
ure03015  mRNA surveillance pathway
ure03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ure00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UREG_05971
  09122 Translation
   03013 Nucleocytoplasmic transport
    UREG_05971
   03015 mRNA surveillance pathway
    UREG_05971
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ure03019]
    UREG_05971
   03041 Spliceosome [BR:ure03041]
    UREG_05971
Enzymes [BR:ure01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     UREG_05971
Messenger RNA biogenesis [BR:ure03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     UREG_05971
Spliceosome [BR:ure03041]
 Complex C
  Other components
   EJC/TREX
    UREG_05971
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    UREG_05971
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 Ned1_M CMS1
Other DBs
NCBI-GeneID: 8438877
NCBI-ProteinID: XP_002585282
UniProt: C4JU32
LinkDB
AA seq 564 aa
MSHEEDLIDYSDEELQTTDAAATAAAPATNGAAAKKGDLTVAGARADKKGSYVGVHSTGF
RDFLLKGELLRAITDCGFEHPSEAFLHFLHLPTSVHHETLGDHRIYASRSLQAARGYAFE
KREEYCIAAASGVLYVSPRDSSGPAKRTYSDYFLLFTRSFLPDCYLVDLLIKNPRDGRTF
GLFASIMPSFELWIETKSNMSLAPHTVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTL
HQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIETLSSK
DTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPAEK
QVLMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYFIKLSESEKNRKLNELL
DNLEFNQVIIFVKSTSRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICV
ATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKVLKD
IEKRFEVALPEYPEEGVDASTYMA
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgtctcacgaagaagatttgattgattactccgacgaggagcttcagacaaccgatgcc
gcagccactgcggctgcccccgctacaaatggagccgctgcgaaaaaaggtgacttgacc
gtcgcgggcgcgcgtgcggacaagaagggtagttatgttggcgtccactcgactggtttc
cgcgacttcctgctaaagggggagcttctacgtgcgatcaccgattgcggtttcgaacat
ccttcggaggctttcctccacttcctgcatcttccaacgtccgtccatcacgaaacactg
ggtgatcatcgaatctatgcatcgcgaagcctgcaggcggcacgaggatacgccttcgag
aagagagaagaatattgcatcgctgctgcatccggtgtcctttacgtttccccgcgggat
tcttcagggcctgcaaagcgtacttattcggactatttcctgttgtttacccgctctttt
ttaccggattgttatcttgttgatcttctcatcaaaaaccctcgcgatggacggacgttt
ggcctctttgcgtcaatcatgccaagttttgagctatggatcgaaaccaagtctaacatg
tccctcgctcctcacacagtccagcaagtttgcattccgaccgctattctcaatgtcgac
gttctgtgccaggccaaatctggtctcggaaaaacggctgtcttcgtcttgaccacgctg
caccagcttgagcctgttcccggtgaatgctcaatcctcgttatgtgccacacccgagaa
ctcgcgtatcagatcaagaacgagtatgcaagatttagcaaatacctcccggatgtcaag
actgcggtcttctacggtggaaccccaatgcaaaaggacattgaaactctttcctccaag
gatacctatcccaacatcgtcgtcggcactcctggtcgattgaatgctctagtccgcgag
aagaaactttctcttcgaaacatcaaagctttcgttctcgatgagtgcgataagatgctt
gaccagattgacatgcgacgggacgtgcaggagattttccgcgcaactccagccgaaaag
caggtcctcatgttcagcgccactctttcccaagagattcgccctatctgcaagaagttt
atgcgcaacccacttgaggtttatgtcgacgatgacactaaattgacgcttcacggcctc
caacaatatttcatcaaacttagtgagtcggaaaagaatcggaagctgaacgagcttttg
gacaaccttgaattcaaccaagttatcattttcgtgaagagtacctcccgtgcaaatgaa
ttggacaaacttcttcgtgaatgtaacttcccaagcattgcagtgcactcgggcgtgtca
caagaagaacgtattaaacggtataaggaattcaaagaattcaacaagcgtatttgcgtt
gccactgatgtcttcggccgtggtattgatattgaacgcattaaccttgctatcaattat
gacatgcccgccgatgccgattcctatttacatcgcgtgggtcgtgccggtcgtttcggt
accaagggcctttccatttcgttcgttagcagcgaagatgatatgaaggtcctcaaggat
atcgagaagcgatttgaagttgcgttgcctgaatatcccgaggagggagtcgacgccagc
acctacatggcataa

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