Usitatibacter rugosus: DSM104443_00205
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Entry
DSM104443_00205 CDS
T06990
Symbol
alkA_1
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSM104443_00205 (alkA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
uru03000
]
DSM104443_00205 (alkA_1)
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_00205 (alkA_1)
Enzymes [BR:
uru01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
DSM104443_00205 (alkA_1)
Transcription factors [BR:
uru03000
]
Prokaryotic type
Helix-turn-helix
AraC family
DSM104443_00205 (alkA_1)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DSM104443_00205 (alkA_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
RecR_HhH
GvpK
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QJR09169
UniProt:
A0A6M4GPA3
LinkDB
All DBs
Position
complement(222333..223763)
Genome browser
AA seq
476 aa
AA seq
DB search
MMLDDTQCYRALLSHDARFDGRFFVGVRTTRIYCRPVCTVKPPLAKNCRYFPSAAAAEIE
GFRPCLRCRPELAPGFATVDANRRLAQSAARLIDDGRLQEASLEDLATQLSVTDRHLRRV
FQQEFGVSPVEYAQTQRLLLAKRLLTDTDMTVLDVALASGFASLRRFNDLFKKRYRMTPG
ELRKSRGAKSPTDRLVFDLAYRPPYDWPATLAFLAKRAITGVEVVDDKRYRRTMRAGKLS
GWIEVVPAPKRAALRVTVSASLALALPSVLSRVKALFDLACNPTEIADALGPLAKANPGL
RLPGAVDGFEIAVRAILGQQVTVKAAITIAGRFVKAFGDECETPFEGLDRLFPKPEAIAT
LTQDDVAKHGIIGARARAIIALAQALESGDLSLEPTAEIDATVAALETIPGVGPWTAQYI
AMRALAWPDAFPHPDVAVLKAMRHDKPRDALANAEAWRPWRAYAVLHLWKSLEKST
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatgctcgacgacacccagtgctaccgcgcgctcctttcccacgacgcccgtttcgac
ggccggttcttcgtgggcgtgcgcacgacacggatctactgccgcccggtctgcacggtg
aagccgccgctcgcgaagaattgccgctacttcccgagcgcggcggccgcggagatcgag
ggattccgcccctgcctgcgctgccggccggagctggccccggggttcgccacggtcgat
gccaatcgccgcctcgcgcaatcggccgcgcgcctcatcgatgatgggcggctgcaggaa
gcgagcctcgaggacctggccacgcagctctcggtcacggaccggcacctgcgccgcgtc
ttccagcaggagttcggcgtctcgcccgtcgagtacgcgcagacgcagcgcctgctcctc
gccaagcgcctgctcacggacacggacatgacggtgctggatgtcgcgctcgccagcggc
ttcgcgagccttcgccgcttcaacgacctcttcaagaagcgctatcgcatgacgccgggc
gagctccgcaagtcgcggggcgccaagtcgccgaccgatcgcctggttttcgatctcgcc
tatcgcccgccgtacgactggcccgccacgctcgccttccttgcgaagcgcgcgatcacc
ggcgtggaggtcgtggacgacaagcgctaccggaggaccatgcgcgccgggaagctctcg
ggatggatcgaggtcgtgccggcacccaagcgcgccgctcttcgcgtcacggtgagcgcc
tcgctcgcactcgccttgccgtcggtcctctcgcgcgtgaaggcgctcttcgatctcgcg
tgcaatccgactgagatcgccgacgccctgggtccactcgcgaaggcaaaccccggcctg
cgtcttcccggcgccgtcgatggcttcgagatcgcggtgcgcgccatcctcggccagcag
gtcacggtgaaagccgcgatcacgatcgcgggccgcttcgtgaaggccttcggagacgaa
tgcgaaactcccttcgaaggcctcgaccgcctcttcccgaaaccggaggcgatcgcgacc
ctcacgcaggacgacgtggcgaagcacggcatcatcggcgcccgcgcacgcgccatcatc
gcgctcgcccaggcgctcgagagcggcgatctttcgctcgagcccaccgccgagatcgat
gcgaccgtcgccgcgctggagacgattcccggcgtcggcccctggaccgcgcaatacatc
gccatgcgggctctcgcgtggcccgacgctttcccccatcccgacgtcgcggtgctgaag
gccatgcgccacgacaaaccgcgcgacgcgctcgcgaacgccgaggcctggcgcccgtgg
cgagcctacgccgtgctccacctgtggaagtccctggagaaatcgacatga
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