Usitatibacter rugosus: DSM104443_01303
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Entry
DSM104443_01303 CDS
T06990
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM104443_01303 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_01303 (mfd)
Enzymes [BR:
uru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM104443_01303 (mfd)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSM104443_01303 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
MFD_D3
Helicase_C
ResIII
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QJR10249
UniProt:
A0A6M4GSH0
LinkDB
All DBs
Position
complement(1323611..1326991)
Genome browser
AA seq
1126 aa
AA seq
DB search
MTAQHPPVAATGSSDALHLARLARERRPLLVLAASALDAERLRAEIAWFDPHLRVHRLPD
WEILPYDQFSPHPDLVSERLATLWQLAAGAFDVAIAPVTTALQRLAPKAYLAGRTFDLKQ
KEKLDLNALRDQLVTAGYAHVQQVMSPGEFCIRGGLIDLFPAGSAIPYRIDLLGDEIETI
RTFDVDTQRSIYPVPSIRMLPAREFPLDETGRAKFRDAFRERFERDPTRSRIYKDVSSGL
APAGVEGYLPLFFEATATIFDYVPDDTAFVLHGPVSQAGEAFWKDLKSRYELLRGDADRP
LLEPRELYLPVEDLFVGLAEFDRYDVKAALGDEAAQQGLPRLDVDRRSVEPLRALKAYVD
GFDGRVLIVAEGPGRRETLSQFFGEHDFHPALVDDWDRFRHSAHPLALTYGPVAAGFQVP
GENIAILTEAELYPGQVRQARRRDARARSSAEGMVRDLAEVKAGDPVVHSQHGIGRYHGL
VTMDLGEGPTEFLHLEYEGGDKLYVPVSQLHVISRYTGAAPDQAPLHRLGSGQWDKAKRR
AAKQVRDTAAELLDLYAKRAARQGYAFPLSAKDFEAFSAGFEFEETPDQAAAIEATVKDM
TSGKPMDRLVCGDVGFGKTEVAMRAAFVAVAAGKQVAILVPTTLLAEQHFGNFSDRFSQF
PVKIAELSRFRNAKEIDAAVAGLASGGIDIAIGTHKLIQSDVVFKNLGLVIIDEEHRFGV
RQKEQLKKLRSEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLAIKTFVNRYSKG
IVREAVLRELKRGGQAYYLHNEVSTIENARADLEELLPEARISVAHGQMRERDLEGVMRD
FYHQRSNVLLCSTIIETGIDVPTANTILINRADRMGLAQLHQLRGRVGRSHHQAYAYLLT
PPEEALNANAKKRLEAIQMMEDLGAGFYLAMHDLEIRGAGEVLGDSQSGGIHDVGFALYT
EMLDTAVKSLKAGKEPDLSQPLNVATEVNLHTPALLPEVYCPDVHERLVLYKRLANCNSD
EDLGRLTEELVDRFGPLPDPTRTLLEAHRLRVQGAPLGVTKIDAAPSGIVVQFMAEPPID
ARKVLKLVQSDRTYKLPGPDRVRIDMKHDDLKARAGEVRQFLKKLA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
ttgacggcgcaacaccctcccgtcgccgccacgggaagctctgacgcgctccacctcgcg
cgtctcgcgcgtgaacgccgtccgctgctggtcctcgccgcctccgccctcgacgccgag
cgcctgcgcgcggagatcgcgtggttcgatccccacctgcgcgtgcaccgcctgccggac
tgggagatccttccctacgaccagttctcgccgcaccccgatctcgtctccgagcgcctt
gcgacgctttggcaactggccgcaggggcgttcgacgtagccatcgcgccggtgaccacc
gcgctgcagcgcctggcgcccaaggcctacctcgcgggccgcaccttcgacctgaagcag
aaggagaagctcgacctcaacgcgctgcgcgaccagctcgtcaccgccggctacgcgcac
gtgcagcaggtgatgtccccgggagagttctgcatccgcggcgggttgatcgacctcttc
cccgcgggcagcgcgattccttaccgcatcgacctcctcggcgacgagatcgagaccatc
cgcactttcgatgtggacacgcagcgatcgatctacccggtgccttcgatccgcatgctg
cccgcgcgcgagttcccgctcgacgagaccggccgcgcgaaattccgtgacgcgttccgc
gagcgcttcgagcgcgacccgacgcgatcgcgcatctacaaggatgtctcgagcggcctg
gcacccgccggcgtggaaggctacctgccgctcttcttcgaggcgaccgcgacgatcttc
gactacgtccccgacgacacggccttcgtgctgcacggcccggtgtcgcaggcgggcgag
gccttctggaaggatctcaagtcgcgctacgagctcctgcgcggcgatgcggaccgtccc
ctgctcgagccgcgcgagctctacctcccggtcgaggaccttttcgtgggcctcgcggag
ttcgatcgctacgacgtgaaggccgcgctgggcgacgaggccgcgcagcaaggtcttccg
cgcctcgacgtcgaccgccgctcggtcgaaccgctgcgggccttgaaagcctacgtggat
ggtttcgacggacgcgtgctcatcgtcgccgaaggccccggccggcgcgagacgctgtcg
cagttcttcggcgagcacgatttccatccggcgctggtcgacgactgggaccgcttccgc
cattccgcccaccccctcgcactcacctatggcccggttgccgcgggcttccaggttccg
ggggagaacatcgcgatcctcaccgaggccgagctctatcccggccaggtgcgccaggcg
cgaaggcgcgatgcgcgcgcgcgttcgagcgccgaggggatggtgcgcgatctcgccgag
gtgaaggcgggagaccccgtcgtccacagccagcacggcatcggccgctatcacggcctg
gtcacgatggacctcggcgaagggcctaccgagttcctgcacctcgaatacgaaggcggc
gacaagctctacgtgccggtgtcgcagttgcacgtgatcagccgctacaccggcgccgca
ccggaccaggcgccgctgcatcgcctcggcagcggccagtgggacaaggccaagcggcgc
gccgcgaagcaggtgcgtgacacggcggcggagctgctcgacctctacgccaagagggct
gcgcgccagggctatgccttcccgctctcggcgaaggacttcgaggcgttctcggcgggc
ttcgagttcgaggagacgcccgaccaggccgcggccatcgaggccacggtgaaggacatg
acgagcggcaagccgatggaccggctcgtgtgcggcgacgtgggcttcggcaagaccgag
gtcgcgatgcgcgcggcgttcgtcgcggtcgctgccggaaagcaggttgccatcctcgtg
cccacgacgctcctggccgagcagcacttcggcaacttcagcgaccgcttctcgcagttc
ccggtgaagatcgccgagctctcgcgcttccgcaacgcgaaggagatcgacgcggcggtg
gcggggcttgccagcggcggcatcgacatcgcgatcggcacgcacaagctgatccagagc
gacgtcgtgttcaagaacctggggctcgtgatcatcgacgaggagcatcgcttcggcgtg
cgccagaaggagcagctgaagaagctgcgctccgaggtcgacgtgctgacgctcaccgcc
actcccatcccgcgcacgctcgcgatgtcgctggaagggctgcgcgatttctccgtgatc
gccaccgcgccccagcgccgcctggcgatcaagacgttcgtgaaccgctactcgaagggc
atcgtgcgcgaagcggtgctgcgggagctgaagcgcggcggccaggcctattacctgcac
aacgaggtctcgacgatcgagaatgcgagggccgatctcgaggagttgctgcccgaggcg
cgcatctcggtggcgcacggccagatgcgcgagcgcgacctcgaaggcgtgatgcgcgac
ttctaccaccagcgcagcaacgtgctgctgtgctcgaccatcatcgagaccggcatcgac
gtgcccacggcgaacacgatcctcatcaaccgtgccgatcgcatgggcctggcgcagctc
caccagctgcggggccgcgtcggccgctcgcaccaccaggcgtatgcctacctgctcacg
ccgcccgaggaagcgctgaacgccaacgcgaagaagcgcttggaggcgatccagatgatg
gaagacctcggcgccggcttctacctcgcgatgcacgacctcgagatccgcggggccggc
gaggtgctgggcgattcgcagtcgggcggcatccacgacgtcggcttcgcgctctacacc
gagatgctcgataccgcggtgaagtcgctcaaggccggcaaggagcccgacctctcgcag
ccgctcaacgtggctaccgaggtgaacctgcacacgcccgcgttgctcccggaggtgtat
tgcccggatgtccacgagcgcctcgtgctctacaagcgtctcgccaactgcaacagcgac
gaggacctcggccgcctcaccgaggagctggtcgaccgcttcggcccgctgccggatccg
acccgcacgctcctcgaggcgcatcggctgcgcgtccagggcgctcccctcggcgtgacc
aagatcgacgccgccccctccggcatcgtggtgcagttcatggccgagcctccgatcgat
gcgcgcaaggtcctcaagctcgtgcagtcggaccgcacgtacaagcttccgggtccggac
cgcgtgcgcatcgacatgaagcacgacgacctcaaggcccgcgccggcgaggtccgccag
ttcctgaagaagctcgcatga
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integrated database retrieval system
