Usitatibacter rugosus: DSM104443_01400
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Entry
DSM104443_01400 CDS
T06990
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03030
DNA replication
uru03430
Mismatch repair
uru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104443_01400 (dnaE)
03430 Mismatch repair
DSM104443_01400 (dnaE)
03440 Homologous recombination
DSM104443_01400 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uru03032
]
DSM104443_01400 (dnaE)
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_01400 (dnaE)
Enzymes [BR:
uru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSM104443_01400 (dnaE)
DNA replication proteins [BR:
uru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DSM104443_01400 (dnaE)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DSM104443_01400 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
RMI2
Motif
Other DBs
NCBI-ProteinID:
QJR10342
UniProt:
A0A6M4GTH2
LinkDB
All DBs
Position
1416213..1419632
Genome browser
AA seq
1139 aa
AA seq
DB search
MAAPRFVHLRLHSEYSIVDGMARVDAAVDAAAADGMPALAITDLGNLFGAVKFFQAARGV
GVQPLVGCDLWITNERSRDHPYRAALLCRNREGYLALCALLTRAHVENHWRGRAEVRREW
LKGVPGLIVLSGARSGDVGQALGASNLVQAEALAREWAADFPGAFYLEVQRADPERDEPY
VRAAVALAGRLDIPVVATHPIQFVKREDYRAHEARVCIAQGYVLGDQRRPREFRPSQYFK
TQDEMAELFADLPEALANTIEIARRCSFEFELGKSRLPDFPTPNGESIEDYLRKRSQEGL
AMRLEALYPDAAARAEAAPTYAERLEFELKTIIQMGFAGYFLIVADFINWAQSHGVPVGP
GRGSGAGSLVAYVLGITGLDPLRYELLFERFLNPERVSMPDFDIDFCQDGRDRVIDYVKQ
KYGAECVSQIATFGTMAAKAVVRDVGRVLGMPYGEVDRIAKLVPFELGITLTKALEMEPQ
LKALVKEQEGVAELMELALSLEGLSRNVGMHAGGVLIAPGKLTDFTPLYSAEGSNALVSQ
FDKDDVEKAGLVKFDFLGLTTLTIIAEAQRNIRSLGQPDFDVEKIPLDDPPSYKVFSSGN
TVAIFQFESRGMRDLIMKARPDRLEDLIALNALYRPGPMDLIPEFIERKHGRQRWEYLDP
RLKEILEPTYGVMTYQEHVMTIAQVIGGYTLGSADLLRRAMGKKKPEEMAKQREIFMKGS
GERGLPAVKANILFDQMEKFAGYGFNKSHSAAYALVAYQTAFLKAHHAAAFMAANLSAVM
TDTDKVQSIYDDAGKNGLKVAPPDINSGSYRFVPLDDKNIRYGLGAVKGTGEGAIENVVA
ARAVGGPFKDLADFCRRVDRRVVNRRAMEALIKAGAFDSVEPNRASLAASLGAAIDVAEK
GEQFANQVSLFGGGDDASHSAFTLVSMPPWPERERLLNEKQSLGFYLSGHPFNAYRDELR
RIASTPLAKVMPTNYGETVMLAGVIYGVQMRNTRRGRMAILTLDDATAKVEVVVFGELFH
EKRAIIQEDQVIALAGKVQNDEFSGGLRVTAEKLMDLSEVRAAHAKLLRLNMNGQADSNK
LRQVLAPYAGGACAVAIRYRNAQGECDIRLPDAYRVKVSEPLLASLNEWLREENVEVVY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggccgccccccgcttcgtccacctccgcctccacagcgaatactcgatcgtcgatggg
atggcgcgcgtggatgccgcggtcgacgcggccgcggccgacggcatgcccgcgctcgcg
atcaccgacctgggcaacctcttcggcgcggtgaagttcttccaggccgcccgcggcgtg
ggtgtccagccgctggtcggctgcgacctctggatcaccaacgagcgcagccgcgaccac
ccctaccgcgctgccttgctctgccgcaaccgcgagggctacctcgccctgtgcgcgctg
ctcacgcgggcgcacgtcgagaaccactggcgcggccgcgccgaggtgcgccgcgagtgg
ctgaagggcgtgccggggctgatcgtgctctccggagcgcgctccggcgacgtgggccag
gcgctcggcgccagcaacttagtccaggcggaagcgctcgcccgcgaatgggccgcggat
ttccccggcgccttctacctcgaggtccagcgcgccgacccggagcgtgacgagccctac
gtgcgagccgccgtggcgctcgcggggcgcctcgacatcccggtcgtcgccacccacccg
atccagttcgtgaagcgcgaggactaccgggcccacgaggcgcgcgtgtgcatcgcgcag
ggctacgtgctgggcgaccagcgccgtccccgcgaattccgcccgtcgcagtacttcaag
acgcaggacgagatggcggagctcttcgccgacctccccgaggcactcgccaacaccatc
gagatcgcgcggcgctgcagcttcgagttcgagctgggcaagagccgcctcccggacttc
cccacgccgaacggcgagtcgatcgaggactacctgcgcaagcgctcgcaggagggcctc
gccatgcgcctggaggcgctgtacccggacgcggcggcccgcgcggaagccgcgccgacg
tacgccgagcgcctcgagttcgagctgaagaccatcatccagatgggcttcgcgggctac
ttcctcatcgtcgcggatttcatcaactgggcgcagtcgcacggcgttcccgtcggtccg
ggccgcggctcgggcgccggttcgctggtggcctacgtgctgggcatcaccggcctcgat
ccgctgcgctacgagctgctgttcgagcgcttcctcaatcccgagcgcgtgtcgatgccc
gacttcgacatcgacttctgccaggacgggcgcgaccgcgtcatcgactacgtgaagcag
aagtacggcgccgagtgcgtctcgcagatcgcgaccttcggcacgatggcggcaaaagcc
gtcgtgcgcgacgtcggccgcgtgctcggcatgccctatggcgaggtcgaccgcatcgcg
aagctcgtgcccttcgagctgggcatcacgctcaccaaggcgctcgagatggagccgcag
ctgaaggccctggtgaaggagcaggaaggcgtggcggagctgatggagctcgccctctcg
ctggaagggctctcgcgcaacgtcggcatgcacgcgggcggcgtgctgatcgcgccgggc
aagctgaccgacttcacgccgctctacagcgccgagggctccaacgcgctcgtgagccag
ttcgacaaggacgacgtcgagaaggccgggctggtgaagttcgacttcctcggcctcacc
acgctcacgatcatcgccgaggcgcagcgcaacatccgctccctgggccagccggacttc
gacgtggagaagatcccgctcgacgatccgccgtcgtacaaggtcttctcctccggcaat
acggtcgcgatcttccagttcgaaagccgcggcatgcgcgacctcatcatgaaggcgcgt
cccgaccggctggaagacctcatcgccttgaacgccctctaccgcccgggcccgatggac
ctgatccccgagttcatcgagaggaagcacggccgccagcgctgggagtacctcgatccc
cggctgaaggagatcctcgagcccacctacggcgtcatgacgtaccaggagcacgtgatg
acgatcgcccaggtgatcggcggctatacgctcggcagcgccgacctgctgcggcgggcg
atgggcaagaagaagcccgaggagatggcgaagcagcgcgagatcttcatgaagggctcg
ggcgagcgcggcctgcccgcggtgaaggcgaacatcctcttcgaccagatggagaagttc
gcgggctacggcttcaacaagtcgcactccgcggcgtacgcgctggtcgcctaccagacc
gcgttcctcaaggcgcaccacgcggccgcgttcatggccgccaacttgtcggcggtgatg
acggacaccgacaaggtccagtcgatctacgacgacgcgggcaagaatggcctcaaggtg
gcgcccccggacatcaactcgggcagctatcgcttcgtgccgctcgacgacaagaacatc
cgctacggcctgggcgcggtgaagggaacgggcgagggcgcgatcgagaacgtcgtcgcc
gcgcgcgccgtgggcgggccgttcaaggacctcgccgatttctgccggcgcgtcgaccgc
cgcgtggtgaaccgccgcgcgatggaggccctcatcaaggccggtgccttcgactccgtc
gagcccaaccgcgcgagcctcgccgcgtcgctcggcgcggcgatcgatgtcgcggagaaa
ggcgagcagttcgccaaccaggtgagcctcttcggcggcggggacgatgccagccattcg
gccttcacgctcgtgtccatgccgccctggccggagcgcgagcgcctgctgaacgagaag
cagagcctcggcttctatctatccggccacccgttcaacgcgtaccgcgacgagctgcgc
cgcatcgcctccacgccgctcgcgaaggtgatgcccaccaactacggcgagacggtgatg
ctggccggcgtcatctacggcgtgcagatgcgcaacacgcgccgcggccgcatggcgatc
ctcacgctggacgacgccacggcgaaggtcgaggtggtggtgttcggcgagctcttccac
gagaagcgcgccatcatccaggaagaccaggtgatcgcgctcgcgggcaaggtgcagaac
gacgaattctccggggggctgcgcgtcacggccgagaagctgatggatctctccgaggtg
cgcgcggcgcatgccaagctgctgcggctcaacatgaacggccaggccgattcgaacaag
ctgaggcaggtcctcgccccgtacgcgggcggcgcctgcgcggtggcgatccgctaccgc
aatgcgcagggcgagtgcgatatccgcctgcccgatgcctatcgcgtgaaggtctccgag
ccgctgctcgcctcgctgaacgagtggctgcgcgaggaaaacgtcgaagtcgtctactga
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integrated database retrieval system
