Usitatibacter rugosus: DSM104443_02113
Help
Entry
DSM104443_02113 CDS
T06990
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSM104443_02113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_02113
Enzymes [BR:
uru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM104443_02113
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSM104443_02113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QJR11042
UniProt:
A0A6M4GVH2
LinkDB
All DBs
Position
complement(2240332..2241948)
Genome browser
AA seq
538 aa
AA seq
DB search
MGLQTYQKKRDFKVTPEPRGEVTPAKASGLRFVIQKHAASHLHYDFRLELDGVLLSWAVP
KGPSLDPDDKRLAMHVEDHPVEYGTFEGVIPKGQYGGGTVMLWDRGTWAPVGDPQDGYKK
GKLKFQLHGKKLHGGWTLVRTRSPKFGEKSWLLIKERDDAAEPAHDGGITVAAPDSVSTG
RSIEAIAGDADRTWSSKKSVAENVSEGAVRPTRKRTAVASTPAPAAKAPASRTRKRTATT
QTEEVAGVDVSNPGKLLYPDAGITKLQLARYYEAVADWIVPHVKDRPLTLVRCPDGWNKE
CFYQKNAPDKIHRAIKPVQVTTSKGEAIYMMANNATAVVAMLNSGALELHPWGSTAKHLD
KPDRLVFDFDPDDDLAFRELVEAVRLVRSLLEELGLQCFLKTTGGKGLHIVVPIRPTLDW
DTAKGFTRSIAESLAFTFPERFTANLSKAKRDGKIFVDYLRNGEGATAVAAYSIRARANA
PVATPIAWEELAKDVRFDHFNVRNVPARLQRKRDPWAGFFQVRQSVTAKMLKSVGYTK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgggactccagacctaccagaagaagcgcgatttcaaggtgacgcccgagccgcggggc
gaagtcacgcccgcgaaggcttcggggctgcgtttcgtcatccagaaacacgccgcgagc
cacctgcactacgacttccgcctcgagctggacggcgtgctgctgagctgggcggtcccc
aagggccccagcctggacccggacgacaagcgcctcgccatgcatgtcgaggaccatccc
gtggaatacggcacgttcgaaggcgtgatccccaagggccagtacggcggcgggacggtg
atgctctgggaccgtggcacgtgggcgccggtgggcgacccgcaggacggctacaagaag
ggcaagctcaaattccaattgcacggcaagaagctccacggcggctggacgctggtgcgc
acgcgcagccccaagttcggcgagaaatcgtggctcctcatcaaggagcgcgacgacgcg
gccgagcccgcccacgacggcggcatcaccgtggcggctccggacagcgtgtcgacgggc
cgcagcatcgaggcgattgccggggatgccgatcgcacctggagctcgaagaaatccgtc
gccgagaacgtctcggaaggcgcggttcgcccgacgcgcaagcgcacggccgtggcctcg
acgccggcgcccgccgcgaaggctccggcgtcgcgcacccgcaagcgcaccgccaccacg
cagaccgaggaggtcgcgggcgtcgacgtgagcaatccgggcaagctcctctatccggac
gccggcatcaccaagctccagctcgcgcgctactacgaagcggtggcggactggatcgtc
ccgcacgtgaaggaccggccgctcacgctggtgcgctgcccggacggctggaacaaggag
tgcttctaccagaagaacgcgccggacaagatccatcgcgcgatcaagccggtgcaggtc
accacgagcaagggtgaagccatctacatgatggccaacaacgccaccgcagtcgtggcg
atgctgaactccggagcgctcgagctgcatccctggggctcgaccgcgaagcacttggac
aagcccgaccgcctcgtcttcgatttcgatcccgacgacgacctcgccttccgcgagctc
gtggaagccgtgcgcctggtgcgctcgctgctggaggagctcgggctccagtgcttcctc
aagaccacgggcggcaaggggctgcacatcgtggtgccgatccgcccgacgctcgactgg
gacacggcgaagggcttcacgcgctcgatcgccgagagcctcgccttcacgttccccgag
cgcttcaccgccaatctctccaaggccaagcgcgacgggaagatcttcgtcgactacctg
aggaacggggagggcgccaccgccgtggccgcgtactcgatccgcgcgcgagccaatgcg
ccggtcgcgacacctattgcgtgggaggagctcgcgaaggacgtgcgcttcgaccacttc
aacgtccggaacgtccccgcgcgcctgcaacgcaagcgcgatccgtgggccggtttcttc
caggtccgccaaagcgtgaccgccaaaatgctcaaatccgtggggtatacgaaatga
DBGET
integrated database retrieval system
