Usitatibacter rugosus: DSM104443_03125
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Entry
DSM104443_03125 CDS
T06990
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM104443_03125 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uru03019
]
DSM104443_03125 (deaD)
03009 Ribosome biogenesis [BR:
uru03009
]
DSM104443_03125 (deaD)
Enzymes [BR:
uru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSM104443_03125 (deaD)
Messenger RNA biogenesis [BR:
uru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSM104443_03125 (deaD)
Ribosome biogenesis [BR:
uru03009
]
Prokaryotic type
rRNA helicases
DSM104443_03125 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJR12042
UniProt:
A0A6M4GYE4
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All DBs
Position
3339390..3341135
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AA seq
581 aa
AA seq
DB search
MPKSPAPDTNPPVPDNAFQALGLDPRIVAALTALGYEEPTPIQQQTIPPLIEGKDLLGQA
ATGTGKTAAFALPILQRIVNEGRVDGSPTAVVLVPTRELAMQVAEAVHRYGKSLGVRVLP
VYGGQPIGRQLHAMRAGVDVVIATPGRALDHLRRGSLQMGGVRIVVLDEADEMLDMGFAE
DIEAVLKESPATRQTVLFSATMPPRIEAIAKRNQREPVVRIRIAKAPVKAGEAPKVRQQA
YLIPRSSKMTTLGRVLDLESPAAAIVFCRTRTEVDELSETLSARGYKAEALHGGMTQEAR
DKVMRRVRSGDSELLIATDVAARGLDIDRLTHVINYDLPAEPEAYVHRIGRVGRAGREGV
AITFVEPREHHGLRNIERLTKHKIDIAKVPTAADLKARKLELTLVALREALVTDDNEHYR
VAVDSLSGDYDPVQIAMAAVKLYHQATVGESENEPDVVDVPTPPPRNPWSGDKPSKHPYR
AHDKASSDGSSPLRRGKGGPNLDMTRIFIGAGRESGVRPQDLVGAIANEAGVAGSLIGAI
QITDRFSLVEVPADTADQVIKALGKSTLRGKKVPVRRDKSD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaatcccccgcacccgacacgaatccccccgtacccgacaacgccttccaggcc
ctcggcctggatccgcgcatcgtcgccgcgctgaccgcgctgggctacgaagagcccacc
cccatccagcagcagacgatcccgcccctcatcgaagggaaggatcttctcggccaggcg
gccactggcaccggaaagaccgccgcgttcgcgctgccgatcctgcagcgcatcgtgaac
gagggccgcgtcgacggcagcccgacggccgtcgtgctcgtgcccacgcgcgagctcgcc
atgcaagtggccgaggccgtgcatcgctacggcaagtccctcggcgttcgcgtgcttcct
gtttacggcggccagccgatcggccggcagcttcacgccatgcgagccggcgtggatgtc
gtgatcgcaacgccgggccgtgcgttggaccacctgcgccggggcagcctgcagatgggg
ggcgtgcgcatcgtggtgctcgacgaagccgacgagatgctcgacatgggcttcgccgag
gacatcgaggcggtgctgaaggaatcgccggccacgcgccagacggtgctcttctccgcg
acgatgccgccgcgcatcgaagccatcgccaagcgcaaccagcgcgagccggtggtgagg
atccgcatcgcgaaggcgccggtgaaggccggcgaggcgccgaaggtccggcagcaggct
tatctcattccgcgctcgtcgaagatgaccacgctcggccgcgtgctcgacctcgagtcg
ccggccgccgcgatcgtcttctgccgcacgcgcaccgaggtggacgagctctccgagacg
ctctcggcgcgcggctacaaggccgaagcgctgcacggcggcatgacgcaggaggcgcgg
gacaaagtgatgcgccgcgtgcgttcgggtgactccgagctgctgatcgccaccgacgtc
gcggctcgcggcctcgacatcgaccgcctcacgcacgtcatcaactacgacctgcccgcg
gagcccgaggcttatgtgcaccgcatcggccgcgtcggacgtgcgggacgtgaaggtgtc
gcgatcacgttcgtcgagccgcgcgagcatcacgggcttcgcaacatcgagcgcctcacc
aagcacaagatcgacatcgccaaggttccgaccgcggcggacctcaaggcccgcaagctc
gagctcacgctggtggccttgcgcgaagcgctggtgaccgacgataacgagcactatcgc
gtcgccgtcgattcgctctcgggcgactacgatcccgtccagatcgcgatggccgcggtg
aagctctatcaccaggccacggtgggtgaaagcgagaacgagccggacgtggtcgatgtt
ccgacgcctccgccgcgcaatccgtggagcggcgacaagccctccaagcatccgtaccgc
gcgcacgacaaggcctcgagcgacggctcttcgccgctgcgccgcggcaagggcggcccc
aatctcgacatgacccgcatcttcatcggcgcgggccgcgagtcgggcgtgcgtccgcag
gatctcgtcggcgccatcgccaacgaggccggtgtcgcggggagcctcatcggcgcgatc
cagatcaccgaccgcttctcgctggtggaagtgccggcggacacggccgaccaggtgatc
aaggccctcggcaagagcacccttcgcggcaagaaggtcccagtccgccgagacaagtcc
gactga
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