Usitatibacter rugosus: DSM104443_03144
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Entry
DSM104443_03144 CDS
T06990
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
uru
Usitatibacter rugosus
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uru03016
]
DSM104443_03144 (rtcB)
Enzymes [BR:
uru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSM104443_03144 (rtcB)
Transfer RNA biogenesis [BR:
uru03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSM104443_03144 (rtcB)
Prokaryotic type
tRNA splicing ligases
DSM104443_03144 (rtcB)
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Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF4402
Motif
Other DBs
NCBI-ProteinID:
QJR12061
UniProt:
A0A6M4GXQ6
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All DBs
Position
complement(3361459..3362679)
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AA seq
406 aa
AA seq
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MKTKTNYREILPDARLWTGDLEIEGEAIEQIRNVSMLPILAGPVAVMPDVHLGRGATVGT
VIPTRAAIVPAAVGVDIGCGMLAVKTNLVAGDLPHNLHGVRSQVERDVPVGFGFHKHPVE
PKHGLVAPKLDKRVRDLETRYPKLRILEWMGRFDEGRMWRQLGSLGGGNHFIEICLDTNG
AVWIMLHSGSRNVGNTIGTVAIERAKRIAKEVDRGLPDRELAWLDEGTAEFEAYVEGLGW
AQEYASLNRDLMLYLVHRALEKALDRKVEFVGEVTNCHHNYARVEEHFGENVWITRKGAV
SARSGELGIIPGSMGAKSFIVRGKGNADSYCSCSHGAGRRMSRTAARKRFTRDDLEAQTK
GVECRKDQGVIDEIPSAYKDIDKVMAAQSDLVEIVATLKQILCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaaaacgaactatcgagaaatcctgccggacgcgcgcctctggaccggcgac
ctggagatcgagggcgaagcgatcgagcagatccgcaacgtctcgatgctcccgatcctc
gccgggccggtggccgtgatgccggacgtgcacctcgggcggggtgcgaccgtgggaacc
gtgatcccgacccgcgcggccatcgtgccggcggcggtgggcgtggacattggctgcggg
atgctggcggtgaagacgaacctcgtcgccggcgacctgccgcacaacctgcacggcgtg
cgctcgcaggtcgagcgtgacgtgccggtgggtttcggattccacaagcatcccgtggag
ccgaagcacggcctggttgccccgaagctcgacaagcgcgtgcgcgacctcgagacgcga
tacccgaagctgcgcatcctggagtggatgggccgcttcgacgagggccgcatgtggcgc
cagctgggcagcctcggtgggggaaaccacttcatcgagatctgcctggatacgaacggt
gccgtgtggatcatgttgcactcgggttcgcgcaacgtcggcaacacgatcggcacggtg
gcgatcgagcgggccaagcgcatcgcgaaagaggtggaccgcggtctgcccgatcgcgag
ctcgcgtggctggacgaaggcacggcggagttcgaggcgtacgtggaagggctcggctgg
gcgcaggagtacgcgtcgctcaaccgggacctgatgctctacctcgtgcaccgagctctc
gagaaggcgctggaccgcaaggtcgagttcgtgggggaagtgaccaactgccaccacaac
tacgcgcgcgtcgaggagcacttcggcgagaacgtgtggatcacgcggaaaggcgcggtg
agcgcgcggtccggagagctggggatcatcccgggctcgatgggtgccaagagcttcatc
gtgcgcggcaagggcaacgcggattcgtactgctcatgctcgcatggtgccggccgccgc
atgagccgcacggctgcccgcaagcgcttcacgcgggacgatctcgaggcccagacgaag
ggcgtcgaatgccgcaaggaccagggcgtgatcgacgagatcccgtctgcgtacaaggac
atcgacaaggtgatggccgcgcagtcggacctggtcgagatcgtcgcgacgctcaagcag
attttgtgtgtgaaaggttga
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