Usitatibacter rugosus: DSM104443_03493
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Entry
DSM104443_03493 CDS
T06990
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
uru
Usitatibacter rugosus
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uru03019
]
DSM104443_03493
Enzymes [BR:
uru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSM104443_03493
Messenger RNA biogenesis [BR:
uru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSM104443_03493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
SRP54
nSTAND3
AAA_23
AAA_25
AAA_30
T2SSE
NACHT
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QJR12407
UniProt:
A0A6M4H3K9
LinkDB
All DBs
Position
complement(3741114..3744989)
Genome browser
AA seq
1291 aa
AA seq
DB search
MNDLPADLFDGTLAADQPKIAALAAQLHERERRGGPVGRERALLGELLDRSRKRHAVRLA
ALPRPTFPEDLPIAQRRDDIAELIAKHPVVIVCGETGSGKTTQIPKICLALKRGAAGLIG
CTQPRRIAARSLSKRLAVELPGTPKGFVGHKIRFQDETRPESVLKVMTDGILLAEIHSDR
ELRAYDTIIVDEAHERSLNIDFLLGYLKRLSAIRPDLKIIVTSATIDTERFSQFFGGAPV
IEVSGRTYPVEVRYRPEFFEVEEEDDEPVDLNEALVKAVDEVHRTSRTGDVLVFLPGERE
IREAAEELRKHGPKGLEILPLFSRLSAEEQDRVFEPTGQRRVVLSTNVAETSLTVPGIHY
VVDTGLARVKRYSPRQKIDQLRIEPISQAAARQRAGRCGRIASGIAIRLYAEQDFNERPE
FTTPEILRTSLASAILRMAALDLGEIAQFPFVDPPTPRQIQDGYQVLFELGAIDEKRQLT
PIGRELSRLPVDPKIGRMLIAARDFHCLSEMVILAAALSIQDPRDRPQDKRQESDRAHEE
FRDDASDFVQLINLWKFFDEAFAHKKSNRKLFETCREHFLSYIRMREWRDLAGQLREMAG
DLKIRDNTAPATYEQMHRALLTGLVTNVGLKALDGDHYNAPRGIPFAIWPGSGLKKNRPR
WIMAGELQETTRIYARNVARIEPEWIEAAASHLVTKVHAEPHWDKQRGEVMAYESVSLYG
LTIVARRKVAFGKLDPFKAREVFIAGALVAGELDTKLAFFAANRALIREVEELEHRARRP
DVLVDDTVVQAWYHARIPEDVRDARTFETWYREASKVTPNLLFLTREELMRHGAESVTEN
LFPREMQIGDATFPLAYRFEPSHALDGVTMNVPLALLNQVEDAPVDWLVPGLIRDKVAWL
MKALPKRIRTQLVPVPEHVTAFLLQEKPGVRTLKEGVLAYAGRRVGERLDDAIWSKDDLP
PHLAMNIRVIDDSKRELAMDRDLGALKKQLGEAASLTLAKAKPGMEREGIKAWDFGDLPA
EVSFRRGNQTLTGYPALVDEEESVAIRLFDSKDKSAEAHRAGVKRLLSFELREQLKNLER
SIGNQNALSLRYVPLIAADKFKADLVAAITDRAFFGEDEPPRTPKGFEEQKKRAKARLPA
VADAVIRHAGSVADAYQEATKTIAQSGALGRITQDVRSQLDRLVGPGFLARTPWERLEHL
PRYIRGYALRLQKYRANAERDNKHNGTVAGLWNWYEERAKADRDAGRHDAKLEEFRWMIE
ELRISLFAQELRTPMPISAKRLLKFRDEHLR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctccccgcagacctattcgacggcaccctcgccgccgaccagccgaagatc
gccgcgctcgccgcgcagttgcacgagcgcgagcgccgtggcgggccggtcgggcgcgag
cgcgcgctgctgggcgagctgctcgaccgctcgcgcaagcgccatgcggtgcgcctcgcg
gcgctgccgcgccccacgttccccgaggacctgccgatcgcccagcgccgcgacgacatc
gccgagctgatcgcgaagcatcccgtggtgatcgtgtgcggcgagaccggctcgggcaag
accacgcagatcccgaagatctgcctcgcgttgaagcgcggcgccgcgggcctcatcggc
tgcacgcagccgcgccggatcgccgcccgcagcctctccaagcgcctcgccgtcgaactg
cccggaacgcccaagggcttcgtcggccacaagatccgcttccaggacgagacgcggccc
gagtcggtgctgaaggtgatgaccgacggcatcctgctcgccgagatccactccgaccgg
gagctgcgcgcctacgacacgatcatcgtcgacgaggcgcacgagcgcagcctcaacatc
gatttcctcctcgggtatctcaagcgcctctccgcgatccgccccgacctgaagatcatc
gtcacctcggccaccatcgatacggagcgcttctcgcagttcttcggcggtgcgccggtg
atcgaggtgagcggccgcacgtatcccgtcgaggtgcgctaccggcccgagttcttcgag
gtggaggaggaggacgacgagcccgtggatttgaacgaggcgctcgtgaaggccgtcgac
gaggtgcaccgcaccagccgcacgggcgacgtcctcgtcttcctgcccggggagcgcgag
atccgcgaagcggccgaggagcttcgcaagcacgggccgaagggcctcgagatcctgccg
ctcttctcgcgcctttccgccgaggagcaggaccgcgtgttcgagcccacgggtcagcgg
cgcgtcgtcctctcgaccaacgtcgccgagacgtcgctcacggtgcccggcatccactac
gtcgtggacacggggctcgcgcgcgtgaagcgctactcgccgcggcagaagatcgaccag
ctgcgcatcgagcccatctcgcaggcggcggcaaggcagcgcgcgggccgttgcggacgc
atcgcgagcggcatcgcgatccgcctctatgccgagcaggatttcaacgagcggcccgag
ttcaccacgccggagatcctgcgcacgtcgctcgcctccgcgatcctgcgcatggcggcc
ctggatctcggcgaaatcgcgcaattccccttcgtcgacccccccacgcctcgccagatc
caggacggctaccaggtgctcttcgagctgggcgccatcgacgagaagcgccagctgacg
ccgatcggccgcgagctctcgcgcctgccggtggacccgaagatcggccgcatgctgatc
gccgcgcgcgatttccactgcctctcggagatggtgatcctggccgcggctctttcgatc
caggacccgcgtgaccgcccgcaggacaagcgccaggaatccgaccgcgcccacgaggag
ttccgcgacgacgcctcggacttcgtgcagctcatcaacctgtggaagttcttcgacgaa
gccttcgcccacaagaaatccaaccgcaagctcttcgagacgtgccgcgagcacttcctc
tcgtacatccgcatgcgcgaatggcgcgacctcgcggggcagctgcgcgagatggcgggc
gatctcaagatccgcgacaacacggcgccggccacctacgagcagatgcatcgcgcgctg
ctcacgggcctcgtcaccaacgtgggcctgaaggcgctggacggcgaccattacaacgcc
ccgcgcggcatcccgttcgcgatctggccgggctcgggcctgaagaagaaccggccgcgc
tggatcatggcgggcgagctgcaggagacgacgcgcatctatgctcgcaacgtcgcgcgc
atcgaacccgagtggatcgaggccgccgcgtcccaccttgtcacgaaggtccacgccgag
ccgcactgggacaagcaacgcggggaggtgatggcctacgagtccgtgtcgctctacggc
ctcaccatcgtcgcgcggcgcaaggtcgccttcggcaagctcgatcctttcaaggcgcgc
gaggtcttcatcgccggcgcgctcgtcgcgggcgagctggatacgaagctcgcgttcttc
gcggccaaccgtgcgctgatccgcgaggtcgaggagctggagcaccgcgcccggcgcccc
gacgtgctcgtcgacgacacggtggtgcaggcctggtaccacgcacgcattcccgaagac
gtgcgcgatgcgcgcaccttcgagacctggtaccgcgaggcgtcgaaggtcacgccgaac
ctgctgttcctcacgcgcgaggagctcatgcgccacggcgcggagtccgtcaccgagaac
ctcttcccgcgcgagatgcagatcggcgatgccacgttcccgctcgcctatcgcttcgag
ccgagccatgccctcgatggcgtgacgatgaacgtgccgctggcactcctcaaccaagtg
gaagacgctccggtcgattggctcgtgcccggactcatccgcgacaaggtggcctggctg
atgaaggcgctgccgaagcgcatccgcacgcagcttgttcccgttcccgagcatgtgacc
gcgttcctcctgcaggagaagcccggtgttcgcacgttgaaggaaggcgtgctcgcgtac
gcaggccgccgcgtgggcgagcgcctcgacgacgcgatctggtccaaggacgacctgccg
ccgcacctcgcgatgaacatccgcgtcatcgacgattcgaagcgcgagctggcgatggac
cgcgacctgggtgcgctgaagaagcagctgggcgaagccgcgagcctcacgctcgcgaaa
gccaagcccggcatggagcgcgaagggatcaaggcctgggacttcggcgacctgcccgcc
gaggtgagcttccgtcgcggcaaccagacgctcacgggctatcccgcgctggtggacgag
gaagagagtgtcgcgatccggctcttcgactcgaaggacaagtccgccgaggcgcaccgc
gcgggcgtgaagcggctgttgtccttcgagctgcgcgagcagctgaagaacctcgagcgc
agcatcggcaaccagaacgcgctgtcgcttcgctacgtgccgctcatcgccgcggacaag
ttcaaggccgacctcgtcgccgccatcacggaccgcgcgttcttcggcgaggacgaaccg
ccgcgcacgcccaagggcttcgaggagcagaagaagcgcgccaaagcgcgtctccccgcc
gtagccgacgccgtgatccgccacgccggctccgtcgccgatgcttaccaggaagccacg
aagaccatcgcgcagtcgggagcgctgggccgcatcacgcaggacgtgcgctcgcagctc
gatcgcctcgtcggccccgggttcctcgcgcgcacgccctgggagcgcctcgaacacctg
ccgcgctacatccgcggctacgcgctgcgcctgcagaagtaccgcgccaacgccgagcgc
gacaacaagcacaacggcacggtcgcgggcctgtggaactggtacgaggagcgcgccaag
gccgaccgcgacgccgggcgccacgacgcgaagctcgaggaattccgctggatgatcgag
gagctgcgcatctccctctttgcccaggagctgcgcacgcccatgcccatctccgccaag
cggctgctgaaattccgcgacgagcatttgcgataa
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