Usitatibacter rugosus: DSM104443_03652
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Entry
DSM104443_03652 CDS
T06990
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM104443_03652 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uru03021
]
DSM104443_03652 (rpoC)
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_03652 (rpoC)
Enzymes [BR:
uru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM104443_03652 (rpoC)
Transcription machinery [BR:
uru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM104443_03652 (rpoC)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM104443_03652 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QJR12566
UniProt:
A0A6M4GZ92
LinkDB
All DBs
Position
complement(3891149..3895354)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIRIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLNRCQLLSEDDYLAKVEEYGDDFSAAM
GAEGVRDLLRKLDVPRDIEQLRTDLAATSSETKIKKIAKRLKVLEAFNKSGIKPDWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGLATTIKAAKRMVESQEPVVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPISLEAQMEA
RTLMLSSNNVLHTAHGEPIIVPSQDIVLGLYYATRQRVAAKGEGSMFQNVAEASRAYESG
GVELHAAITVRIREVLKGEDGELKEVVNRYETTVGRALLSEILPAGLPFPLINKPLKKKE
ISKLINEAFRRCGIRETVIFADKLMYTGFTYATRAGLSICVDDLLIPDEKVKIIDASEKE
VKEIERQYTSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGNEKVIDRKGKEVTQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTMMGMDMKALVEGGEVVEPLRERIL
GRVAATDVQHPESRDVVLAAGTLLDEAGVERLESLGVDEVKVRTPLTCETRFGLCARCYG
RDLGRGTLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAVASSVEAKSNGVVHF
SNTMRYITNAKDELIAISRNGEIIISDESGGRERERHKVPYGAMLAVKDGVKVKAGQVLG
TWDPLTRPIITEYAGEIRFENVEEGVTVAKQIDETTGLSSLVVIDPKRRGTSATKGLRPA
VKLIGAGGKEVKLAQGDAPVNYTFQIGAIITVKNGQQVQVGDVIARIAQESSKTRDITGG
LPRVAELFEARSPKDAGLLAEITGTVSFGKDTKGKQRLIITDVEGAAHEYLIPKEKHVTV
HDGQVVNKGETIVDGPADPHDILRLQGMEALARYIIDEVQDVYRLQGVKINDKHIEVIVR
QMLRRIQITDPGETRFITGEQVERADLLTENDRITANNSGKKPGEFQYMLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHSTRKKVVVEP
GASSSFGFSLDEADVSNEQVA
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctgttcaagcaggtcacccaggaagaagagttcgacgcgatc
cgcatcggcctcgcttcccccgacaagatccgctcgtggtcgtacggcgaggtgaagaag
ccggagacgatcaactaccgcacgttcaagccggaacgcgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctctgcggcaagtacaagcgcctgaagcac
cgcggcgtcatctgcgagaagtgcggcgtggaagtcacgctgaccaaggttcgccgcgag
cgcatgggccacatcgagctcgcgagcccggtcgcccacatctggttcctgaagagcttg
ccgtcgcgcctgggcatggtgctggacatgacgctgcgcgacatcgagcgcgtcctgtac
ttcgaagcctatgtcgtgaccgacccgggcatgacgccgttgaaccgctgccagctcctc
tccgaggacgactacctcgcgaaggtcgaggagtacggcgacgacttctccgccgccatg
ggcgcggaaggcgttcgcgatctgctgcgcaagctggatgtcccccgcgacatcgagcag
ctgcgcacggacctcgccgccacgtcgtcggaaaccaagatcaagaagatcgccaagcgc
ctgaaggtgctggaggcgttcaacaagtccggcatcaagcccgactggatgatcatggaa
gtgctgccggtgctgccgccggacctgcgccccctggtcccgctggacggcggccgcttc
gcgacctccgacctgaacgacctctatcgccgcgtgatcaaccggaacaaccgcctgaag
cgcctgctggagctgaaggccccggaaatcatcgtgcgcaacgagaaacgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggcgatgacgggcgccaac
aagcgcgccctcaagtcgctcgccgacatgatcaagggcaagagcggccgcttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgctcggtcatcgtggtcggtccgacg
ctgaagctccaccagtgcgggctgccgaagctcatggcgctcgagctcttcaagccgttc
atcttccacaagctggaagtgatgggcctcgccacgaccatcaaggcggccaagcgcatg
gtggaaagccaggagccggtggtgtgggacatcctcgaggaagtcatccgcgagcacccg
gtcctgctgaaccgcgccccgacgctgcaccgcctcggcatccaggctttcgagcccgtg
ctgatcgagggcaaggcgatccagctgcacccgctcgtctgcgccgcgttcaacgcggac
ttcgacggcgaccagatggccgtccacgtccccatctcgctcgaagcgcagatggaagcc
cgcacgctcatgctgtcgtccaacaacgtgctgcacaccgcgcacggcgagccgatcatc
gtgccgtcgcaggacatcgtgctgggcctgtactacgccacgcgccagcgtgtcgcggcc
aagggcgaaggctcgatgttccagaacgtcgccgaagcgagccgtgcctacgagtcgggc
ggggtcgagctgcacgcggcgatcacggtgcgcatccgcgaagtcctgaagggcgaggac
ggtgagctgaaggaggtcgtcaaccgctacgagacgaccgtcggccgcgcgctgctgtcg
gagatcctcccggccggcctgccgttcccgctcatcaacaagccgctgaagaagaaggaa
atctcgaagctgatcaacgaggccttccgccgctgcggcatccgcgagacggtcatcttc
gcggacaagctcatgtacacgggcttcacctacgccacgcgcgcgggcctgtcgatctgc
gtcgacgacctcctcatccccgatgagaaggtgaagatcatcgacgcgagcgagaaggaa
gtgaaggagatcgagcgccagtacacctccggcctcgtgacccagggcgagcgctacaac
aaggtggtcgacatctggggccgcgccggcgaccagatcgccaaggcgatgatggaccag
ctcggcaacgagaaggtcatcgaccgcaagggcaaggaagtcacgcaggaatcgttcaac
gcgatctacatgatggccgactcgggtgcgcgcggttccgccgcgcagatccgccagctg
gccggcatgcgcggcctgatggcgaagccggacggctcgatcatcgagacgccgatcacg
gcgaacttccgcgaaggcctgaacgtgctgcagtacttcatctcgacgcacggtgcgcgc
aaaggcctggccgacacggcgcttaagaccgccaactcgggctacctcacgcgccgcctg
gtcgacgtgacgcaggatctcgtggtggtcgaggacgattgcggcacgatgatgggcatg
gacatgaaggcgctggtcgagggcggcgaagtggtcgagccgctgcgcgagcgcatcctg
ggccgcgtcgccgcgacggacgtgcagcatccggagagccgggacgtcgtcctggccgcc
ggcacgctgctggacgaggcgggcgtcgagcgcctggagagcctgggcgtggacgaggtc
aaggtccgcactccgctcacgtgcgagacgcgcttcggcctgtgcgcccgctgctatggc
cgtgacctcggccgcggcacgctggtgaacgtcggcgaggcggtgggcgtcattgccgcg
cagtcgatcggcgagccgggcacgcagctcacgatgcgtaccttccacatcggcggcgcg
gcttcgcgcaccgcggtggcgagctcggtggaggccaagtccaacggcgtggtgcacttc
tccaacacgatgcgctacatcaccaacgccaaggacgagctgatcgcgatctcgcgcaac
ggcgagatcatcatctccgacgagagcggcggccgcgagcgcgagcgccacaaggtgccg
tacggcgccatgctggcggtgaaggacggcgtgaaggtgaaggcgggccaggtcctcggc
acgtgggatccgctcacgcgcccgatcatcaccgagtacgccggcgagatccgcttcgag
aacgtcgaggagggtgtcaccgtggccaagcagatcgacgagaccacgggcttgtcgagc
ctggtcgtgatcgatccgaagcgccgcggcacgtcggccaccaagggcctgcgcccggcc
gtgaagctgatcggcgccgggggcaaggaagtgaagctcgcccagggcgatgcgccggtg
aactacacgttccagatcggcgccatcatcacggtgaagaacggccagcaggtgcaggtc
ggcgacgtgatcgcgcgtatcgcgcaggaatcgtccaagacccgcgacatcacgggcggc
ctgccgcgcgtggcggagctgttcgaagcgcgctcgccgaaggatgcgggcctgctcgcg
gagatcaccggcacggtctcgttcggcaaggacaccaagggcaagcagcgcctcatcatc
accgacgtcgagggtgccgcccacgagtacctgatcccgaaggaaaagcacgtcacggtg
cacgacggccaggtggtcaacaagggcgagacgatcgtcgacggcccggcggatccgcac
gacatcctgcgtctccaggggatggaagcgctggcccgctacatcatcgacgaggtgcag
gacgtctaccgcctccagggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgc
cagatgctccggcgcatccagatcacggatccgggcgaaacccggttcatcaccggtgag
caggtcgagcgcgccgatctcctcacggagaacgaccgcatcacggccaacaacagcggc
aagaagcccggcgagttccagtacatgctcctgggcatcaccaaggcgtcgctgtccacc
gactcgttcatctcggcggcctccttccaggagaccacccgggtgctcaccgaggcggcg
atcatgggcaagagggacgacctgcgcggcctcaaggagaacgtcatcgtcgggcgcctc
atcccggcgggcacgggcctggcctaccactcgacccggaagaaggtcgtggtcgagccg
ggggccagctcctcgttcgggttctccctggacgaggctgacgttagtaacgagcaggtt
gcttga
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integrated database retrieval system
