Usitatibacter rugosus: DSM104443_03653
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Entry
DSM104443_03653 CDS
T06990
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
uru
Usitatibacter rugosus
Pathway
uru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM104443_03653 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uru03021
]
DSM104443_03653 (rpoB)
03400 DNA repair and recombination proteins [BR:
uru03400
]
DSM104443_03653 (rpoB)
Enzymes [BR:
uru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM104443_03653 (rpoB)
Transcription machinery [BR:
uru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM104443_03653 (rpoB)
DNA repair and recombination proteins [BR:
uru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM104443_03653 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QJR12567
UniProt:
A0A6M4H3X3
LinkDB
All DBs
Position
complement(3895413..3899489)
Genome browser
AA seq
1358 aa
AA seq
DB search
MTYSFTEKKRIRKSFAKRAAVLDVPFLLATQINSYAEFLQAESHADKRIESGLQSAFQSV
FPISSHSGSARLEYVSYALGEPPFDVVECQQRGLTFASPLRAKVRLVIMDREATKPTIKE
MKEQEVYMGEIPLMTRNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALGYKPEQILEHFFAFDTFHFAKKG
GIEFDIVPERLRGEIARFDIATKAGKVIVQKDKRITVKHIRELEAAGMKKLSVEPDYLLG
RVIAKNTVNTTTGEIVANANDEITEAVLKKLLDSGIETLQTLYTNDLDQGPYISQTLRID
ETVDQLNAQVAIYRMMRPGEPPTEEAVKTLFGGLFFNEDRYDLSDVGRMKFNRRVGKDEL
TGKMTLSNEDIVAVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRSGLVRVERA
VRERLSQAESEQLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEITHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEFGFIETPYRKV
HDGKVTKDIEYLSAIEEGKYTIAQANAEVDKHGKFVDELVSCRHRNEFTLSGPEKIEYID
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKSLVGTGIERTVAIDSGT
AVQARRGGRIDYVDAGRIVVRVNDNETRPGEAGVDIYNLTKYTRSNQNTNINQRPLVKVN
DQIAAGDVVADGASTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVAEDRYTSIHIE
ELVVVARDTKLGAEEITRDISNLSERMLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGINGTVIDVQVFTREGIQRDKRAQQIIDEQLK
DYRKDLHDQLRIVEDDLFARLERMLTGKTAKGGPKKLAKGAKIAKAYLAELERHEWFDIR
LTDDDSAVQLEQLRESLELTRKEFDKAFEEKKKKLTQGDELPPGVQKMVKVYVAVKRRLQ
PGDKMAGRHGNKGVISKIVPVEDMPFMADGTPVDIVLNPLGVPSRMNVGQILETHLGWAA
KGLGQRIQEMLRAQEAPAKLRKFLEKIYNGAGKKEDLASFTDEEIIELCRNLQAGVPFAT
PVFDGATEVEIKDMLELAGHPRSGQITLFDGRTGDAFDRSVTVGYMHILKLHHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDTQGRTKV
YENIVKGEHKIEAGMPESFNVLVKEIRSLAIDIDLERY
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgacctattctttcaccgagaagaaacgcatccgcaagagcttcgcgaagcgcgcggcc
gtcctggatgtgcccttcctcctggccacgcagatcaactcgtacgccgagttcctgcag
gctgaatcgcatgcggacaagcgcatcgagtccggcctgcagtcggccttccagtcggtg
ttcccgatctccagccattcgggcagcgcccgcctggagtacgtgagctacgccctgggc
gagcccccgttcgacgtggtggagtgccagcaacgcggcctcaccttcgccagcccgctg
cgcgcgaaggtccgcctggtgatcatggatcgcgaagcgaccaagccgaccatcaaggag
atgaaggagcaggaggtgtacatgggcgagatcccgctcatgacccgcaacggctccttc
gtcatcaacggcaccgagcgcgtcatcgtctcccagctgcaccgctcgcccggcgtgttc
ttcgagcacgaccgcggcaagacgcactcctccggcaagctcctgttctcggcccgcgtg
attccgtaccgcggctcgtggctcgatttcgagttcgaccccaaggactacctctacttc
cgcgtcgaccgccgccgcaagatgccggtgacgatcctgctgaaggcgctcggctacaag
cccgagcagatcctcgagcatttcttcgcgttcgacacgttccatttcgccaagaagggc
ggcatcgagttcgacatcgtccccgagcgcctgcgcggcgagatcgcgcgcttcgacatc
gcgacgaaggccggcaaggtcatcgtccagaaggacaagcgcatcaccgtgaagcacatc
cgcgagctggaagccgcgggcatgaagaagctctccgtcgagcccgactacctcctcggc
cgcgtgatcgccaagaacacggtgaacaccaccacgggcgagatcgtggcgaacgccaac
gacgagatcaccgaagccgtcctcaagaagctcctggactccggcatcgagacgctgcag
accctctacaccaacgacctcgaccagggcccgtacatctcgcagaccctgcgcatcgac
gagaccgtcgaccagctcaacgcccaggtcgccatctaccgcatgatgcgtcccggcgag
ccgcccaccgaggaggccgtgaagacgctcttcggcggactcttcttcaacgaagaccgc
tacgacctctccgacgtcggccgcatgaagttcaaccgccgcgtgggcaaggacgagctc
acgggcaagatgacgctgtccaacgaggacatcgtcgcggtgatcaagatcctcgtggag
ctgcgcaacggccgcggcgagatcgacgacatcgaccacctcggcaaccgccgcgtgcgt
tccgtgggcgagctggcggagaaccagttccgctcgggcctcgtccgcgtcgagcgcgcc
gtgcgcgagcgcctctcgcaggccgagagcgagcagctgatgccgcacgacctgatcaac
gcgaagcccgtctccgcggcgatcaaggagttcttcggctcctcgcagctctcgcagttc
atggaccagaccaacccgctgtccgagatcacgcacaagcgccgcatctcggccctgggc
ccgggcggcttgacgcgcgagcgcgccggcttcgaggtgcgcgacgtgcacccgacgcac
tacggccgcgtctgcccgatcgagacgccggaaggcccgaacatcggcctcatcaactcg
ctcgcactctacgcgcgcacgaacgagttcggcttcatcgagaccccgtaccgcaaggtg
catgacggcaaggtcacgaaggacatcgagtacctgtcggcgatcgaggaaggcaagtac
acgatcgcgcaggcgaacgccgaggtggacaagcacggcaagttcgtcgacgagctggtc
tcgtgccgccaccgcaacgaattcacgctgtccggcccggagaagatcgagtacatcgac
gtcgcgccctcgcagatcgtgtcggtcgccgcttcgctgatcccgttcctcgagcacgat
gacgcgaaccgcgcgctgatgggctccaacatgcagcgccaggccgttccctgcctgcgt
gccgagaagtccctcgtcggcaccggcatcgagcgcacggtcgcgatcgactccggcact
gccgtccaggcacgccgcggcggccgcatcgactacgtggacgccggccgcatcgtcgtt
cgcgtgaacgacaacgagacgcgcccgggcgaagcgggcgtggacatctacaacctcacg
aagtacacgcgctccaaccagaacaccaacatcaaccagcgtcccctggtgaaggtgaac
gaccagatcgccgccggtgacgtggtggccgacggcgcctcgaccgacatgggcgagctg
gcgctgggccagaacctgctggtcgcgttcatgccctggaacggctacaacttcgaggac
tccatcctcatctccgagcgcatcgtcgccgaagaccgctacacctcgatccacatcgag
gagctggtcgtcgtcgcgcgcgacacgaagctcggcgccgaggagatcacccgcgacatc
tcgaacctctccgagcgcatgctctcgcgcctggacgagtcgggcatcgtctacatcggg
gccgaagtcgaggccggcgacgtgctggtgggcaaggtcacgccgaagggcgagacgcag
ctcacccccgaagagaagctgctgcgcgccatcttcggcgagaaggcctccgacgtgaag
gacacgtcgctgcgcgtgccctcgggcatcaacggcaccgtgatcgacgtgcaggtcttc
acccgcgagggcatccagcgcgacaagcgcgcccagcagatcatcgacgagcagctgaag
gactaccgcaaggacctccacgaccagctgcgcatcgtcgaggacgacctcttcgcgcgc
ctggagcgcatgctcacgggcaagaccgccaagggcggcccgaagaagctcgccaagggc
gccaagatcgccaaggcgtacctggccgagctcgagcgccacgagtggttcgacatccgc
ctcacggatgacgactccgccgtccagctggagcagctgcgcgagagcctcgagctcacc
cgcaaggagttcgacaaggccttcgaggagaagaagaagaagctcacgcagggcgacgag
ctgcccccgggcgtgcagaagatggtgaaggtctacgtcgcggtgaagcgccgcctgcag
ccgggcgacaagatggccggccgccacggcaacaagggcgtgatctccaagatcgtcccg
gtcgaggacatgcccttcatggccgacggcacccccgtcgacatcgtgctgaacccgctc
ggcgtgccttcgcggatgaacgtggggcagatcctcgagacgcacctgggctgggccgcc
aagggcctgggccagcgcatccaggagatgctgcgcgcccaggaggctccggccaagctg
cgcaagttcctcgagaagatctacaacggagcgggcaagaaggaagacctcgcttcgttc
acggacgaggagatcatcgagctctgccgcaacctccaggcgggcgttccgttcgcgacg
ccggtgttcgacggcgcgaccgaggtcgagatcaaggacatgctcgagctggccggccac
ccgcgcagcggccagatcacgctgttcgacggccgcacgggcgatgccttcgaccgctcg
gtgaccgtgggctacatgcacatcctgaagctgcaccacctggtcgacgacaagatgcac
gcgcgttccaccggcccgtactcgctcgtcacccagcagccgctgggcggcaaggcgcag
ttcggcggccagcgcttcggcgagatggaggtctgggcgctggaagcgtacggcgcctcg
tacacgctgcaggagatgctcaccgtcaagtcggacgacacgcagggccgcaccaaggtc
tacgagaacatcgtgaagggcgagcacaagatcgaggcgggcatgcccgagtcgttcaac
gtgctggtgaaggaaatccgctccctcgcgatcgacatcgacctcgagcgttattga
DBGET
integrated database retrieval system
