Usitatibacter rugosus: DSM104443_04199
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Entry
DSM104443_04199 CDS
T06990
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
uru
Usitatibacter rugosus
Brite
KEGG Orthology (KO) [BR:
uru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uru03016
]
DSM104443_04199 (rnb)
Enzymes [BR:
uru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSM104443_04199 (rnb)
Transfer RNA biogenesis [BR:
uru03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSM104443_04199 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QJR13105
UniProt:
A0A6M4H185
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All DBs
Position
complement(4435787..4437619)
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AA seq
610 aa
AA seq
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MKQVLFEEDGSFRVGTILADAGATFQVEAAHGKRSKVKAASILLRFDNQALQALMPDAQK
LSEEIDPQFLWEVCGGDEFGFEALAKDYYGHAPSPVEATAVALRLHASPIFFYKRGKGRY
QAAQAENLKAALAGVEKKRKQQEQVDAWAAELAADRVPEAIAAKLDTLLFKPDKMALEWR
ALDQAATAAGLAPPRLLARAGALAGPEDFFLRRFAFEFFPRGTGFAEVPPLTEPEGLSLA
TARAFSIDDHETTEIDDAFSVERPGDGTVRVGVHIAAPALFFGREHPLEALARERLSTAY
FPGGKITMLPEAAVAAATLAEGRTVPAVSLYLTLDAATLDITATESKVERIEIESNLRIG
ELETRLNEAAIAADRVEGAHGEDLLLLHRLAGRLRVARGAKEEKGDRVDYTIRVADGRVS
VEPRRRGTPIDTLVAELMIHVNATWGKLLAERGVTGMYRNQRGIKTRMEVEPGSHEWLGV
SHYAWSSSPLRRFSDLANQRQLVAALGFAPPPYSKDDLAAAARDFETVYEAYNEHQRTLE
RHWVLRYLLQEGIAESDATVIREELVRLEGLPLVCRAIGLPPVAPGEKVRIAFGEPDLWD
PSVLCRYAGK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggtgctcttcgaggaggacggaagcttccgcgtcggcacgatcctcgcggat
gccggcgccaccttccaggtggaagccgcgcacggcaagcgctccaaggtgaaggccgcg
agcatcctgctgcgcttcgacaaccaggcgctccaggcgctgatgcccgatgcgcagaag
ctctccgaggagatcgacccgcaattcctctgggaagtgtgcggcggcgacgagttcggc
ttcgaggcgctcgcgaaggactactacggccacgcgccctcgcccgtggaggcgaccgcg
gtcgcgctgcggctgcacgcgagcccgatcttcttctacaagcgcggcaagggccgatat
caagcggcccaggcggagaacctgaaagcggcgctcgccggcgtggagaagaagcgcaag
caacaggaacaagtggacgcatgggccgccgagctcgccgcggaccgcgtgcccgaggcc
atcgccgcgaagctcgacaccctcctcttcaagccggacaagatggcgctcgagtggcgt
gcgctggaccaggccgccacggccgcggggctcgctccgccgcgcctgctcgcccgcgcc
ggggcgctcgccggccccgaggatttcttcctgcggcgtttcgcgttcgagttcttcccg
cgcggcaccggcttcgcggaggtcccgccgctcaccgagcccgagggcctttcgctcgcc
accgcgcgcgccttctcgatcgacgaccacgagaccaccgagatcgacgacgcgttctcg
gtcgagcgtcccggcgacggcaccgtgcgcgtgggcgtgcacatcgcggcgcccgcgctc
ttcttcggccgcgagcatccgctggaagcgctcgcgcgcgagcgcctgtccacggcctat
ttccccggcggcaagatcacgatgctgcccgaggccgcggtggccgcggccacgctcgcg
gaaggccgcacggtcccggccgtctcgctctatctcacgctcgatgcggccacgctcgac
atcaccgccaccgaatcgaaggtggagcggatcgagatcgaatcgaacctgcggatcggc
gagctcgagacgcgcctgaacgaggctgctatcgccgcggaccgcgtcgagggcgcgcac
ggcgaggatctcctgctgctgcaccgcctcgcggggcggctgcgcgtcgcgcgcggcgcc
aaggaggagaagggcgatcgcgtcgactacacgatccgcgtcgccgacggccgcgtgtcg
gtcgagccgcggcggcgcggcacgcccatcgacacgctcgtggccgagctgatgatccac
gtgaatgcgacgtggggaaaattgctcgccgagcgcggcgtgaccggcatgtatcgcaac
cagcgcggcatcaagacacgcatggaagtcgagcccggtagccacgaatggctcggcgtc
tcccactacgcgtggtcgagctcgccgctgcgccgcttctcggatctcgcgaaccagcgc
cagctcgtcgcggcgctcggattcgcgccgcctccctactcgaaggacgacctcgccgcc
gccgcccgcgatttcgagacggtgtacgaggcgtacaacgagcaccagcgcacgctcgag
cgccactgggtgctgcgctacctcctccaggagggcatcgcggagtcggatgccacggtg
atccgcgaggagctcgtgcgcctcgagggcctgccgctggtgtgccgcgcgatcggcctc
ccgccggtggcgcccggcgaaaaggtccgcatcgccttcggcgagcccgacctgtgggac
ccctccgtgctatgccgctatgcggggaaatag
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