Uruburuella suis: LVJ78_05725
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Entry
LVJ78_05725 CDS
T08067
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
usu
Uruburuella suis
Pathway
usu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
usu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ78_05725 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
usu03019
]
LVJ78_05725 (rnr)
03016 Transfer RNA biogenesis [BR:
usu03016
]
LVJ78_05725 (rnr)
Enzymes [BR:
usu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LVJ78_05725 (rnr)
Messenger RNA biogenesis [BR:
usu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVJ78_05725 (rnr)
Transfer RNA biogenesis [BR:
usu03016
]
Prokaryotic type
tRNA degradation factors
LVJ78_05725 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UOO80493
LinkDB
All DBs
Position
complement(1289935..1292382)
Genome browser
AA seq
815 aa
AA seq
DB search
MQKKSNSPSLREKDPFLAREQQRYDHPLPSREWVIELLQKEGVPLKIEALANKLSITEAE
QEFFERRIKAMARDGQVLINRRGAVCAADKLELVKCRVEAHKDGFGFAVPLTPTGQGDFV
LYERQMRGLMHGDIVTVRPAGIDRRGRREGQVLDIVERAQKEVVGRFYIERGIAILEPED
KRLNQSIMLEPDSLAAFKPEQGQVVVAEIDSYPDGHRPAVAKLIEVLGDYADSGMEIEIA
VRKHHLPHVFSEACLQEAAKIPDEVRPNDIKGRVDLRDLPLMTIDGETARDFDDAVYAEK
IGRNFRLIVAIADVSHYVRPGDAIDTDALERTTSVYFPRRVIPMLPEKLSNGICSLNPDV
DRLCMVCDMVVTYAGNIKEYKFYPAVMRSHARLTYTQVWNWIEKGGDYPHKAQIEPLYKL
FQILQKKRQQRGAMEFESTETQMLFDDGGKIERIVPVVRNDAHKLIEECMLAANVCAAEF
LLKNKHTALFRNHLGPTPEKLATLREQLGLLGLHLGGGDKPTPKDYATLAEKIADRPDQE
LLQVMLLRSMQQAAYEPSNEGHFGLAYEAYAHFTSPIRRYPDLTVHRAIKAVLNGEKYAP
KSWQALGVSCSFNERRADDASRDVENWLKTYYMRDKVGEVFTGRVSGMAQFGIFVTLNDI
HIEGMVHVSDLGEDYFNYRPEIMAMVGERSGIRFNMGDEVTVRVARADLDTSKIDLTLIS
SESEGKKPGRGKKQTPPQNAAPAKAAAAKAGQAKTAKSSSAKAAASGKQSKALKMVDGKI
TLVSKEHNQAADEHKKSRTAAAPAAKKPAPRKRRK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaaatccaactctcccagcctgcgggaaaaagacccgtttttggcacgcgaa
caacagcgctacgatcaccccctccccagccgcgagtgggtgattgaattgctgcaaaaa
gaaggcgtgccgctcaaaatcgaagccttagcaaacaagctctcgattaccgaagcggag
caagaatttttcgagcgccgcatcaaagcgatggcgcgcgacggtcaggtgttgatcaac
cggcgcggtgccgtgtgtgcggccgacaagctggaattggtgaaatgccgcgtggaagcg
cataaagacggctttggctttgccgtgccgctcacccctacaggccagggcgatttcgtg
ctttatgagcgccaaatgcgcgggctgatgcatggcgacatcgttaccgtgcgcccggcc
ggcatcgacaggcgcggccgccgcgaaggccaggtgctcgatattgtcgagcgggcgcaa
aaagaagtggtcggccgcttttatatcgaacgcggcatcgccattttggagccggaagac
aagcgcctgaaccaaagcattatgctggagcccgacagcttagccgcattcaagcccgag
caagggcaagtggtggtggcggaaatcgacagctatcccgacggccaccgcccggccgta
gccaagcttatcgaagtgttgggcgattatgccgacagcggcatggaaatcgaaatcgcc
gtgcgcaagcatcatctgccgcatgtgttcagcgaagcctgcctgcaagaagcggcgaaa
attcccgatgaagtgcgcccgaatgatattaaaggccgggtggatttgcgcgatttgccc
ttgatgaccatcgatggcgaaaccgcccgcgatttcgatgatgccgtgtatgccgaaaaa
atcggccgcaatttccgcctgattgtggccattgccgatgtgagccattatgtacgcccc
ggcgatgccatcgacaccgacgcgctggagcgcaccaccagcgtgtatttcccgcgccgc
gtgattccgatgctgccggaaaaattgtccaacggcatctgctcgctcaaccccgatgtg
gatcgcttgtgcatggtgtgcgacatggtggtcacttatgccggcaatatcaaagagtat
aaattttatccggccgtgatgcgctcgcatgcgcgcctcacctacacacaggtgtggaac
tggattgaaaaaggcggcgattatccgcacaaagcccaaatcgagcctttatataaactg
tttcagattttgcagaaaaaacgtcaacagcgcggtgccatggaatttgaaagcaccgaa
acacaaatgctgtttgacgatggcggcaaaatcgagcgcatcgtgccggtggtgcgcaac
gatgcacacaagctgattgaagagtgcatgctggcagccaatgtgtgcgcggcggaattt
ttgctgaaaaacaaacacacggcgctattccgcaaccacttggggcccacgcccgaaaag
ctcgccaccctacgcgagcagctcggcctgctcggcctgcatttgggcggcggcgacaag
cccacgccgaaagattacgccacgttggcagaaaaaatcgccgaccgccccgaccaagag
ctgctgcaagtgatgctgctacgctcgatgcagcaagcagcatacgagccgagcaatgaa
ggccatttcggcctggcttacgaagcctacgcccacttcacctcacccatccgccgctat
cccgatctcaccgtgcaccgcgccattaaagcggtattgaacggcgaaaaatatgcgccg
aaatcctggcaggcgctgggcgtgagctgctcgtttaacgagcggcgcgccgatgatgcc
agccgcgatgtggaaaactggctcaaaacctattacatgcgcgacaaagtgggcgaagtg
ttcaccggccgcgtgtcgggcatggcgcaattcggcattttcgtcaccctcaacgatatc
cacatcgaaggcatggtgcatgtgagcgatttgggtgaagactatttcaactaccgcccc
gaaatcatggccatggtgggcgagcgcagcggcatccgcttcaatatgggcgatgaagtt
accgtcagagtggcccgtgccgatttggacaccagcaaaattgatttaaccttaatcagc
agcgagagtgaaggcaagaaacccggccgcggcaaaaagcagacgccgccgcaaaatgcc
gcacccgccaaagccgccgccgctaaagccggccaagccaaaacagccaaaagcagcagc
gccaaagccgccgcttcgggcaagcagagcaaagcactgaaaatggtcgacggcaaaatc
accttggtcagcaaagagcacaaccaagccgcagatgaacacaaaaaaagccgcaccgcc
gccgcgccggcagcgaaaaaaccggcaccacgcaagcgcaggaaataa
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