Uruburuella testudinis: LVJ83_05765
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Entry
LVJ83_05765 CDS
T08135
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ute
Uruburuella testudinis
Pathway
ute03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ute00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVJ83_05765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ute03400
]
LVJ83_05765 (mfd)
Enzymes [BR:
ute01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVJ83_05765 (mfd)
DNA repair and recombination proteins [BR:
ute03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVJ83_05765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
HemY_N
Motif
Other DBs
NCBI-ProteinID:
UOO82966
LinkDB
All DBs
Position
complement(1250887..1254279)
Genome browser
AA seq
1130 aa
AA seq
DB search
MNQTLPAPAQKTVWPGLSRGSLPLFLAENLPEKTLKAVFTQDVEQALRLQAAWQFFRPQD
TTVFLPDWETLPYERFSPHQDLVSERLSALWQLKNKQADVLFVPVATAMQKLAPVSFMAG
RTFWLKAGQTLNIDALRESLVEAGYSSVTNVVATGEFAVRGGILDIFPMGSEAPYRLDMF
DDEIDSIKTFDPDSQRTLAPVSEIRLLPAHEFPTDTDAQKIFRARFREEIEANPAHAAVY
QAVSKGHFGAGVEYYLPLFFEDDCATLFDYIGEDAVAVCIGDAHAEAARYWADVKTRFAM
AQGDETYPPLHPRHLYLSDSEFSGRLKPYPQILPEFDSPAHTLPDVAVNRQAEQPLQALQ
DFQTAFAGKILLCAESLGRRETMLGFMQQHGIKPQTVDNWQAFLHSDAPLCLTVTPLAYG
FQLPSESIAVITESDLYQYVARSRSKTRRKHNAVSDGLLRDLAEINIGDPVVHEEHGIGR
YMGLVNMDLGEGSGEMMLLEYAEEALVYVPVSQLHLISRYSGAAHDNVHLHKLGSGAWSK
AKRRAAEKARDTAAELLNLYAQRAAQQGHKFELNEQDYQAFADGFGYEETEDQAAAIGAV
LKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVCVLAPTTLLVEQHAQNFADR
FADFPVKVAQLSRFNSGKATQQALAGMKDGTVDIVIGTHKLVQPDIEFKNLGLVIIDEEH
RFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGLRDFSLITTAPNRRLAVKTFVKP
FSEASIREAVLRELKRGGQVFFLHNEVETIENMHERLAELLPEARIGVAHGQLRERELEQ
VMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYA
YLLTPEYITKDAEKRLDAIAAADDLGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFSL
YTEMLKQAVRDLKKGRVPDLDAPLGVTTDIKLHSPALLPESYCPDIHERLVLYKRLATCE
TEQQINAVHEELVDRFGLPEQPVKTLLESHRLRLAAKALGIDAIDATSEAVTLTFGKNHS
IDPAEIILLIQNNKNYRLAGQNKLRVHAVMEDVDTRIQTAKAVLKKLQGK
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaacccttcccgcccctgctcaaaaaaccgtctggcccggcctctcgcgcggc
agcctgccgctgtttctcgccgaaaacctgcccgaaaaaacactcaaagccgtgtttacc
caagatgtggaacaagccctgcgccttcaggctgcgtggcagtttttccggccgcaagac
accaccgtctttctgcccgactgggaaacgctgccttacgagcgcttttcgccacaccag
gatttagtatcagagcgtttgtcggctttgtggcaattgaaaaacaaacaggccgacgtg
ctgtttgtgcccgttgccacggcaatgcaaaagctcgcgccggtgtcgtttatggcggga
cgcacattttggctgaaggcggggcaaacgctaaacatcgatgctttgcgcgaaagcctg
gtggaagcgggctacagcagcgtgaccaatgtcgtggccacgggcgaattcgccgtgcgc
ggcggcattctggatattttcccgatgggcagcgaagcgccttaccggctggatatgttt
gacgatgaaatcgacagcatcaaaactttcgaccccgacagccagcgcaccctcgcaccg
gtgagcgaaatccgcctgctgccggcacacgaatttcccaccgataccgatgcgcaaaaa
atcttccgcgcccgcttccgcgaagaaatcgaagccaaccccgcccatgccgccgtgtat
caagccgtgagcaaaggccatttcggcgccggcgtcgaatattacctgccgctgtttttt
gaagacgactgcgccacgctgttcgactatatcggcgaagatgccgtggccgtctgcatc
ggcgacgcccatgccgaggcggcgcgctattgggccgatgtcaaaacccgttttgccatg
gcgcaaggcgatgaaacctacccgcctttacatccacggcatttgtatctcagcgacagc
gaattttcaggccgtctgaaaccctatccgcaaatcctgcccgaattcgacagccccgcg
cacacattgcccgatgtagccgtcaaccgccaggccgaacagcctttgcaggcgctgcaa
gattttcagacggcctttgcgggcaaaatcctgctgtgtgccgaaagcctcggccgccgc
gaaaccatgctcggttttatgcagcaacacggcatcaagccgcaaacagtcgacaactgg
caggcctttttgcacagcgatgcaccgctgtgccttaccgttaccccgctggcttacggc
tttcaattgccgtctgaaagtatcgccgtcatcaccgaatccgacctttatcaatacgtg
gcccgcagccgcagcaaaacccgccgcaaacacaacgccgtttcagacggcctgttgcgc
gatttggccgaaatcaacatcggcgacccggtggtgcacgaagaacacggcatcggccgc
tacatggggctggtcaacatggatttgggcgaaggcagcggcgaaatgatgctgctcgaa
tacgccgaagaagcgctcgtgtatgtgcccgtgtcgcaactgcacctcatcagccgctac
tccggcgccgcccacgacaacgtgcatctgcacaaactcggcagcggcgcatggagcaaa
gccaaacgccgtgccgccgaaaaggcgcgcgacaccgccgccgagctgctgaatttatac
gcccaacgcgccgcccagcaaggccacaaattcgaattaaacgagcaagactaccaagcc
tttgccgacggcttcggctatgaagaaaccgaagaccaggccgccgccatcggcgcagtg
ttgaaagacctcacccaaggcaaaccgatggaccgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagttgccctgcgcgccgcctttgtagccgtgatgggcggcaaacaagtg
tgcgtacttgcccccaccactttgctggttgagcaacacgcgcaaaactttgccgaccgc
ttcgccgattttcccgtcaaagtggcccaattgtcgcgcttcaacagcggcaaagccacc
caacaagccttggccggcatgaaagacggcacagtcgatatcgttatcggcacccacaaa
ctggtgcagcccgatatcgaattcaaaaacctcggcctcgtgattattgatgaagaacac
cgcttcggcgtgcgccaaaaagagcagctcaaacgcctgcgcgccaatgtcgacatcctc
accctcaccgccacgccgattccgcgcacgctgagcatggcgctcgaaggcctgcgcgat
ttctcgctcatcaccaccgcccccaaccgccggctggccgtcaaaaccttcgtcaaaccc
ttcagcgaagccagcatccgcgaagccgtgttgcgcgagctcaaacgcggcggccaagtg
ttttttctgcacaacgaagtcgaaaccatcgaaaacatgcacgagcggctggccgagctc
ctgcccgaagcccgtatcggcgtagcccacggccaattgcgcgaacgcgagctcgagcaa
gtgatgcgcgactttctgcaacaacggttcaacgttttgctctgttccaccatcatcgaa
accggcatcgacattcccaacgccaacaccatcatcatcaaccgcgccgataaattcggg
ttggcgcaactgcaccagctgcgcgggcgcgtcggccgcagccaccaccaagcctacgcc
tacctgctcactcccgaatacatcaccaaagacgccgaaaaacgcctcgacgccatcgcc
gccgccgatgatttgggcgcaggcttcaccttggccatgcaagaccttgaaatccgcggc
gccggcgaaatcctcggcgaaggccaaagcggcgaaatgatacaggtcggcttttcgctc
tacaccgaaatgctcaaacaagccgtgcgcgatctcaaaaaaggccgcgtgcccgacctc
gatgccccgctgggtgtcaccaccgatatcaagctgcacagccctgcgctgctgcccgaa
agctactgccccgacatccacgaacggctggtgctctacaaacgcctcgccacctgcgaa
accgagcagcaaatcaacgccgtgcacgaagagctggtcgaccgcttcggcctgcccgaa
caacccgtcaaaaccctgctcgaaagccaccgcctgcgtctggccgccaaagcactgggc
atcgatgccatcgacgccacctccgaagccgttaccctgaccttcggcaaaaaccacagc
atcgaccctgccgaaatcattctcttgattcaaaacaacaaaaactaccgcctggccgga
cagaacaaattaagagtgcatgcggtgatggaagatgtagacacacggattcagacggcc
aaagcggtattgaagaaattacaggggaaataa
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