Ureibacillus thermophilus: DKZ56_00695
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Entry
DKZ56_00695 CDS
T09780
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
uth
Ureibacillus thermophilus
Pathway
uth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
uth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DKZ56_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uth03400
]
DKZ56_00695
Enzymes [BR:
uth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DKZ56_00695
DNA repair and recombination proteins [BR:
uth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DKZ56_00695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QBK24558
UniProt:
A0A4P6URM7
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All DBs
Position
162857..164695
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AA seq
612 aa
AA seq
DB search
MQPMLLTSADEWPRGNEWIYEVKYDGYRAILHWENDLPTIISRNQRDITFLFPEIIDFCK
RTYPLLAPFLPLTMDGEMVFLENNFRSNFSIVQSRGKTKSKQKVEEASKKFPCQFIAFDL
LKIQGTDLVTLPLIERKKHLSQLFKETPLPNKIKFFQRGQIQCIESYEDGDSLWKMIKTH
NGEGMIAKRKTSLYTAGKRIDDWLKIKNWRMVTVIVHTFNKENDYFTGAVYKDNQLTEVT
AFKHGLTDEQFQTLAAFFRTKGEKLSSSVWMLPPSICADIACIDFDGKKLREPRFHSFRF
DLSPEECYWKNFQKQLHPMPEEVPVTHPEKPIWPKLNLLKEDYLLYLEYIAPYMLPFLQN
RALTTIRYPHGVPGEHFYQKNVPDYAPNYVQTKQIEGIHYIVCNNLSTLFWLGNQLALEF
HIPFQTIDTAHPTEIVFDLDPPSQKEFPLAIEAALKMKAIFDQLQLQSFVKTSGNKGLQV
YIPLPKNQFTYDETRIFTEFICQFLVNQVSHKFTLERLKKNRGNKLYLDYVQHAEGKTII
APYSPRGNEWGSIATPLYWEEVKEGLNPNHFTLPTIIERIKTIGDPFNHFFEAGENQPLK
AVLKELKNLLKK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgatgcttttgacatctgcggacgaatggccaaggggaaacgagtggatttat
gaggtgaaatatgacggctatcgcgccatactgcattgggaaaatgacttacccaccatt
ataagccgaaatcagcgggatatcacattcctctttccagaaataattgatttttgtaaa
cgcacttatccattgcttgctccttttcttccgttaacaatggatggagaaatggtcttt
ttagaaaacaactttcgaagcaatttttccatcgttcaatcccgtggaaaaacaaaatcc
aaacaaaaagtggaggaagcaagcaaaaagtttccttgccaatttatcgctttcgatttg
ctgaaaatacagggaacagatttggtaacgctgccccttattgaacgaaaaaaacatttg
tcccaactcttcaaagagacaccacttccaaataaaatcaaatttttccaacgcggacaa
attcaatgcattgaaagctatgaagatggcgatagtctttggaaaatgattaaaacacac
aacggcgaaggaatgattgctaaaaggaaaacaagtctttatacagctggaaaaaggata
gatgactggctgaaaatcaaaaattggcgaatggtaaccgtcatcgttcataccttcaat
aaagaaaacgattattttaccggcgccgtttataaagacaatcagttaacggaagttacc
gcttttaaacacggcctcaccgatgaacagtttcaaacgctagccgcctttttccgaaca
aagggagaaaaactttccagctctgtttggatgttacctccttccatttgcgccgatatt
gcttgcattgattttgatggaaaaaagttaagggagccaagatttcattctttccgtttt
gatttatcgccggaagagtgctattggaaaaactttcaaaaacagctgcatccaatgcca
gaagaggtgccagttactcatcctgaaaaaccgatttggccgaaattgaatttattgaaa
gaggattatcttctatatttagaatatattgctccttatatgcttccttttttgcaaaat
cgcgcccttacgactattcgttatccccatggtgttccgggagaacatttttatcaaaaa
aatgttcccgattatgctccgaattatgtgcaaacaaaacaaatagaaggcatccattat
attgtttgcaataatttgtctacgttattttggcttggcaatcaattggctttagaattt
catatcccatttcaaacaattgatactgcacatccaactgaaattgtctttgatttggac
ccgccatcccaaaaagaatttccactggccatagaagcggcattaaaaatgaaggccatt
tttgaccaattgcagctgcagtccttcgttaaaacttctggcaacaaaggtttgcaagta
tatattccattaccgaaaaatcagttcacctatgatgaaacccgcatttttactgaattt
atatgtcaatttttagtcaaccaagtttctcataaatttacgttagagcgattgaaaaag
aatcggggaaataaattgtatttagactatgtgcagcatgcggagggaaaaacgattatt
gctccatactcgccaaggggaaatgaatggggaagcattgcaacacccctttattgggaa
gaagtaaaggaaggtttaaatccgaatcactttacccttccaaccattattgaacgaatc
aaaacaattggagatccttttaatcatttttttgaagcgggcgaaaatcagccattaaaa
gcggtcttgaaggagttaaaaaacttattaaaaaaataa
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