Ureibacillus thermophilus: DKZ56_10545
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Entry
DKZ56_10545 CDS
T09780
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
uth
Ureibacillus thermophilus
Pathway
uth02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
uth00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DKZ56_10545 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uth03021
]
DKZ56_10545 (rpoD)
Transcription machinery [BR:
uth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DKZ56_10545 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DUF2316
HTH_20
FitA-like_RHH
Exonuc_VII_L
DUF2408
Motif
Other DBs
NCBI-ProteinID:
QBK26264
UniProt:
A0A4P6UT24
LinkDB
All DBs
Position
complement(2129395..2130519)
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AA seq
374 aa
AA seq
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MADNLSERSREILEKNLEEAKNFLRQKAKNDGISMEEISKKLEPFELEPDEIFHFAEELE
SQYDIRVEGKEEFEEEAIAKQEELEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLTA
EEETELAKRIEQGDEEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDHRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGREP
TPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDAQSPADHAAYE
LLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaatttgtcagaacgttcaagagaaattttagaaaaaaatttggaagaggcg
aaaaattttcttcgacaaaaagcaaaaaatgatggaatttccatggaggaaatttctaaa
aagctagaaccatttgaattagaacctgatgagatctttcactttgcagaagaattagaa
agccaatatgatattcgagtggaaggaaaagaagagttcgaagaagaagcgatcgcgaaa
caagaagaattggaagaagaatttgatttaaatgatttaagcgttcctcctggtgtgaaa
attaacgaccctgttcgaatgtatttaaaagaaattggacgtgtcgacttattaactgca
gaagaagaaacggaattagcaaagcgtattgagcaaggtgatgaagaagctcgaaaaaga
cttgcagaagcaaacttgcgattagtagtatctatcgcaaaacgatacgtgggtcgcgga
atgctgttcttggatttaattcaagaaggaaatatggggttaattaaagcggttgaaaaa
ttcgaccaccgcaaaggatttaaattttctacgtatgctacttggtggattcgacaagcc
attacccgtgccatagctgatcaagcgagaacaatccgcattccagttcatatggtagaa
acaatcaataaattagtacgtgttcaacgtcaattattgcaagacttaggccgcgaacca
acaccagaagaaattgcagaagaaatggatttaacgcctgagaaagttcgggaaatccta
aaaattgctcaagaaccggtatctcttgaaacaccaattggtgaagaagacgattcccat
ttaggtgatttcattgaagaccatgatgcgcaatcaccagcggatcacgcagcttacgaa
ttattaaaagaacagcttgaagatgtattagatacattaacggaccgtgaagaaaacgtg
cttcgccttcgtttcggattagatgatggccgtacgcgcacccttgaagaagtcggcaaa
gttttcggtgtaacccgtgaacgtattcgccaaattgaggcaaaagctttaagaaaattg
cgccatccatctcgaagcaaacgtttaaaagacttcttggaataa
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