Ustilaginoidea virens: 66060925
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Entry
66060925 CDS
T11247
Symbol
UV8b_00147
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
uvi Ustilaginoidea virens
Pathway
uvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
66060925 (UV8b_00147)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66060925 (UV8b_00147)
03041 Spliceosome [BR:
uvi03041
]
66060925 (UV8b_00147)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
66060925 (UV8b_00147)
Spliceosome [BR:
uvi03041
]
Complex B
Other components
Prp19-related factors
66060925 (UV8b_00147)
Complex C
66060925 (UV8b_00147)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
RPN7
TPR_2
NRDE-2
Motif
Other DBs
NCBI-GeneID:
66060925
NCBI-ProteinID:
XP_042993579
UniProt:
A0A8E5ME27
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All DBs
Position
1:complement(join(877460..879679,879727..879897,879965..880006))
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AA seq
810 aa
AA seq
DB search
MAVLSAGPRALEGVSNEDLIYEQDVLRDLSSIKPWITYIDFKSRHGSLLEQNMVMARACA
QLPRSYKLWIKYLSFRTAHVAKLNPATFASEYAKVNALFERALILLHKMPRIWEMYLQFL
SRQPKITFIRRAFDRALRALPITQHNRIWTLYLPFANAAAGNTSIKIWRRYMQVHPEEME
DFIELLVENGAYTDAVLCYMDLLNNVRFTSKHGKGHYELWGEMIDLLVAHASAIESNYET
GIDVEGIIKSGIRRFSDQRGKLWAGLATYWIRRGSFEKARDAFEEGITTVMTVRDFALIF
ESYTEFEESVIRALMESASSRATGSEDDDDVELEWEVRMMRFEHLMDRRPFLVNDVLLRQ
NPNLVSEWEKRVALWSDNNEEVIRTYAQAIAAINPKHAIGSFHKLWANYARFYERGGDIR
NARIIMEKAVRVPFKSVAELADMWIEWAELELRNKNFDEAARIMAKAVQAPKRSSVDYFD
ESLSAQQRVHKSWKLWSFYVDLVESVSTLPEVRKVYERILELRIATPQTIVNYANVLEEN
RYYEESFKVYERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAVEDCPPRFAK
TIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNLYITKSASNFGLSSTRPIYE
RAITALSDSEVKEMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNRDFWERWEQFEVQ
HGNEDTFKEMLRVKRSVQAQYNTDVNFIATQALARGQQASAQPPPYTVTAPGLGKQAAAM
PGFVAASDSLPSTVRQGDTTANPDAIDIEQ
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggctgttttgtctgcgggaccaagagctctcgaaggagtatcaaatgaggatctgatt
tatgaacaagatgtgttgcgtgatctcagtagcatcaagccgtggatcacctatatcgat
tttaagtctcgacatggttcacttttggagcaaaacatggtaatggcgcgggcctgcgcc
caattaccgcggtcgtataagctatggataaagtatctttcctttcgcacagctcacgtg
gcgaagctgaatccagcgacttttgcctccgaatacgccaaagtcaatgcgttgtttgaa
agagccctcattcttcttcataaaatgccccggatatgggagatgtacctacagtttctg
agcaggcaacctaaaatcacttttatcagacgtgccttcgaccgcgccttgagggcttta
ccgattacgcaacacaatcgaatttggacactgtatctgccgtttgcgaacgccgccgca
ggaaacacttccatcaagatctggaggcgctatatgcaggtacatccagaggagatggag
gacttcatcgagctgctcgtcgagaatggcgcctacaccgacgcggtgttatgttacatg
gatctcctgaacaatgttcgattcacaagcaaacatggcaaaggtcactacgaactatgg
ggtgagatgatcgatctgctggtggcccatgcatccgctattgaatcaaactacgaaact
ggcatagacgtcgaaggcatcatcaaaagcggaatacgccgcttttctgatcaaaggggc
aaactttgggccggactcgctacctattggattcgaagaggcagtttcgagaaggcccgg
gacgccttcgaggagggaattaccacagtcatgacagtcagggacttcgcgcttatattc
gagtcatatacagaattcgaagagtcagtaatcagagcgctcatggaaagcgcctcgagc
cgggcgacaggcagcgaagatgatgatgacgtggaacttgagtgggaagttcgtatgatg
cgtttcgagcacttaatggatcgccgtccctttctagtcaacgacgtgctactacgccag
aatccaaatcttgtgtcggagtgggagaaacgagttgcgctctggagcgacaacaacgag
gaggttatccgcacatacgcacaggccattgctgccatcaacccaaaacatgccattggc
tcattccacaagttgtgggctaactatgcacgattctatgaacgagggggagacattcga
aacgctcgcataatcatggaaaaagcggtcagggttccatttaaatctgttgctgagctg
gcagatatgtggatcgaatgggctgagctggagcttcgcaataagaatttcgatgaagct
gcgagaatcatggcgaaggctgtccaagccccgaagagatcatcagtcgactatttcgat
gaatcactctcagcacaacagcgggtgcacaaaagttggaaactctggagtttctacgtg
gaccttgtggagagcgtctccacgctgccagaagttaggaaggtctatgagcgtattctt
gagcttcgtatcgcaaccccacaaaccattgtcaactacgcgaatgtcttggaagaaaac
agatactatgaagagtcgttcaaggtttacgagagagggctggacttgttcagttacccc
gtggcattcgagctgtggaatttatatttgaccaaggcagtagatcgcaaaataggaatc
gaaaggctgcgggatctgtttgagcaagccgtagaggactgtcctcccagattcgcgaag
actatctacctaatgtacggaaacttggaagaggagcgagggctggcaagacatgcaatg
cgcatctatgaaagagcaacgagagcggtcagtgacgaggaccgcgccgacatgttcaac
ctctacatcaccaagtcagcctccaacttcggattatcgtcaacccgtcccatttacgaa
agagctattaccgcgctttcagattcagaagtcaaggagatgtgcctcaagtttgcggat
atggaaaagcggctgggcgaaatcgacagagcgcgcgccatttacggacacgcctcgcaa
ttctgcgatcctcggacgaatcgggatttctgggagcgatgggagcagtttgaggttcag
cacggaaacgaggatactttcaaggagatgttgcgcgtcaaacgaagcgttcaggcgcag
tacaacaccgacgtcaacttcatcgcaacgcaagccctggctcgcggtcaacaggcctcg
gcgcagcctccgccttatacggtcactgcaccgggccttggcaaacaagcagcggcaatg
ccgggtttcgtagcggcgagtgactcgcttccatcgacagttcggcaaggggatacgaca
gcaaacccagatgctatcgatatagagcaatga
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