KEGG   Ustilaginoidea virens: 66062017
Entry
66062017          CDS       T11247                                 
Symbol
UV8b_01239
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
uvi  Ustilaginoidea virens
Pathway
uvi03013  Nucleocytoplasmic transport
uvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:uvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    66062017 (UV8b_01239)
  09122 Translation
   03013 Nucleocytoplasmic transport
    66062017 (UV8b_01239)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:uvi03019]
    66062017 (UV8b_01239)
   03041 Spliceosome [BR:uvi03041]
    66062017 (UV8b_01239)
Messenger RNA biogenesis [BR:uvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     66062017 (UV8b_01239)
Spliceosome [BR:uvi03041]
 Complex C
  Other components
   EJC/TREX
    66062017 (UV8b_01239)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    66062017 (UV8b_01239)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_2nd WDR55 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st DSE1_N CFAP251_N WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_VPS8 TP_0598_N Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 eIF2A Beta-prop_WDR75_2nd WD40_RFWD3 ASA1 PAC11 PROPPIN Ras
Other DBs
NCBI-GeneID: 66062017
NCBI-ProteinID: XP_042994671
UniProt: A0A8E5ME72
LinkDB
Position
1:join(5394575..5394693,5394762..5394835,5394905..5395143,5395383..5395749,5395896..5395940,5396005..5396168)
AA seq 335 aa
MTPVLRARQSLPKDRFSTYFGNLRSQPYNDPNSARGFSHSFRTIAWNPLGTLVATGSSDK
TLRVWNPEKPHVKFSTELKGHNASVEKVAFNPTKDAELCSVSADGVVKFWDVRTKACFNE
VKGLGEALSLAWAPDGETLVVGNKTDSIFVLSPRQSTHLAIHQQNVPTNQITFCYSGTKV
FVTTSEGKIRILSYPSFKPALSVQHGEEEQEFMLNGHTSSCLTAEMQPTARYLATGGSDS
IIALWDTNDWLCQRTLTRMTGPVRSISFTFDGSYIVGGSDEGNGLEVSHVETGEHVHTFK
TAGSCPVVAWAPTRYCLAYSDLGILRIVGVDVDRK
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgacaccagttctaagggccaggcaaagcttgccaaaggaccggttttcaacgtacttt
gggaatttgcgcagccagccgtacaacgacccgaactcggcaagggggttttcgcattcg
tttcgaaccattgcgtggaatccgttggggactttggtggcgacaggctcatcagacaag
acgctgcgagtctggaaccctgaaaaacctcatgtcaagttttccacggaactcaagggt
cacaatgcttccgtggagaaggttgccttcaacccaacaaaggacgcggagctgtgtagc
gtgagcgctgatggagtggtcaagttctgggatgtgcggaccaaagcctgcttcaacgag
gttaagggcttgggggaagcgttgagtttggcctgggcgcccgacggggaaacactggtt
gttgggaacaagactgacagcatattcgtcctgtcgcccagacaatctacccatcttgcc
atccaccagcaaaatgttccaaccaaccaaatcacgttttgctatagcggcaccaaagta
ttcgtcactacctcggaaggcaagattcgcatcctctcctatccgagcttcaagccagct
ctcagcgttcaacatggcgaagaggagcaagagttcatgctcaacggacacacgtcgtcg
tgccttacggcggagatgcaaccaacggcgaggtatttggctacagggggctcagattcc
atcattgccttgtgggacacgaacgactggttgtgtcagcgtacgctgacaagaatgacg
gggccggtgaggagtatcagctttacgtttgacgggagctacattgttggcggcagtgac
gaaggcaatggattggaagtatcgcatgtggagacaggagagcatgttcatacgttcaaa
acggcgggatcgtgcccagttgtagcgtgggctccaaccagatattgcttggcgtatagt
gatttagggattcttcgcatcgtgggagtggatgtggatagaaagtga

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