KEGG   Ustilaginoidea virens: 66063527
Entry
66063527          CDS       T11247                                 
Symbol
UV8b_02749
Name
(RefSeq) uncharacterized protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
uvi  Ustilaginoidea virens
Pathway
uvi03018  RNA degradation
uvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:uvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    66063527 (UV8b_02749)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    66063527 (UV8b_02749)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:uvi03019]
    66063527 (UV8b_02749)
   03041 Spliceosome [BR:uvi03041]
    66063527 (UV8b_02749)
Messenger RNA biogenesis [BR:uvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     66063527 (UV8b_02749)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     66063527 (UV8b_02749)
Spliceosome [BR:uvi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    66063527 (UV8b_02749)
SSDB
Motif
Pfam: LSM SM-ATX LSM14 Glyoxalase_7 Phage_VG64
Other DBs
NCBI-GeneID: 66063527
NCBI-ProteinID: XP_042996181
LinkDB
Position
2:join(3577967..3577991,3578048..3578104,3578171..3578209,3578277..3578304,3578370..3578433,3578494..3578523)
AA seq 80 aa
MASQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFDYSGDHTKLP
KILLNGNNICMLIPGGEGPA
NT seq 243 nt   +upstreamnt  +downstreamnt
atggcctctcaactactgcctctagaactcatcgacaagtgtgtcggctcacggatatgg
gtcatcatgaagggagaaaaggagtttagcggcacccttgtcggctttgacgactacgtc
aatatggttctggaagatgtaacggagttcgattactcaggagaccacaccaagttgccc
aagattctgctcaatggcaacaacatctgcatgctgattcctggaggcgaaggaccagct
tga

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