Ustilaginoidea virens: 66063561
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Entry
66063561 CDS
T11247
Symbol
UV8b_02783
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
uvi Ustilaginoidea virens
Pathway
uvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
66063561 (UV8b_02783)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66063561 (UV8b_02783)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
66063561 (UV8b_02783)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
66063561 (UV8b_02783)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
66063561
NCBI-ProteinID:
XP_042996215
UniProt:
A0A8E5MG59
LinkDB
All DBs
Position
2:join(3676524..3676979,3677143..3677313)
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AA seq
208 aa
AA seq
DB search
MAVDQVPPVAVPGQTLGPASKYVPGSGTHVYQGNVVSSLLGRVTVTAPARAPGPAKRLNK
ITAPVPEELATISVARHGRKREILPDVNNVVLARVVRLMPKQAIVVIQQVGETVLQTEWQ
GVIRVQDVRATEKDKVKMHESFKPGDIVKAQVISLGDQANYYLSTAANELGVIMATSEAG
NDMVPVSWKEYKDPETGMSESRKVAKPT
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggccgttgaccaagtcccgcctgtagctgtgcctggccaaacgcttggcccagcctca
aagtacgtgcccggctccggcacccacgtctaccaaggcaacgtcgtctcctccctcctg
ggccgagtgacggtgacggcgccagcaagggctcccggcccggcgaagcggctgaacaag
atcacggcccctgtccccgaggagctcgccacgatatctgtcgcccgccacggccgcaag
cgcgagatcctgcccgacgtaaacaacgtcgtgctcgcgcgcgtggtgcgcctgatgccc
aagcaggccattgtggtcattcaacaggttggcgagacggtgcttcagacggaatggcag
ggcgtcatccgcgtgcaggacgtgcgtgccacggaaaaggacaaggtcaagatgcacgag
tcgttcaagcctggggatatcgtcaaggcgcaagtcatttctttgggtgaccaggcaaac
tactatctatccactgctgcgaacgaacttggggtgatcatggccaccagcgaggcaggc
aacgacatggtcccagtgagctggaaggagtacaaggaccctgagacggggatgagcgag
tctcgaaaggttgcaaagccgacttga
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