Ustilaginoidea virens: 66065155
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Entry
66065155 CDS
T11247
Symbol
UV8b_04377
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
uvi Ustilaginoidea virens
Pathway
uvi03013
Nucleocytoplasmic transport
uvi03015
mRNA surveillance pathway
uvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
66065155 (UV8b_04377)
09122 Translation
03013 Nucleocytoplasmic transport
66065155 (UV8b_04377)
03015 mRNA surveillance pathway
66065155 (UV8b_04377)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66065155 (UV8b_04377)
03041 Spliceosome [BR:
uvi03041
]
66065155 (UV8b_04377)
Enzymes [BR:
uvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
66065155 (UV8b_04377)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
66065155 (UV8b_04377)
Spliceosome [BR:
uvi03041
]
Complex C
Other components
EJC/TREX
66065155 (UV8b_04377)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
66065155 (UV8b_04377)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
DUF6066
Motif
Other DBs
NCBI-GeneID:
66065155
NCBI-ProteinID:
XP_042997809
UniProt:
A0A063C491
LinkDB
All DBs
Position
3:join(5420955..5421180,5421912..5422322,5422436..5422796,5422864..5423121,5423196..5423244)
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AA seq
434 aa
AA seq
DB search
MSHEEDLIDYSDEEIGANETAAAGSNGKKGELAVSNDVDKKGSYVGIHSTGFRDFLLKPE
LLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQEVFRVTPTQKQVMMFSATLSD
AIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYFIKLLEKEKNRKLNELLDDLQFNQVIIF
VRSTARATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSDQDQEVLREIEKRFEVALPE
FPKEGVDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaagaagatcttatcgactactccgatgaggagattggcgccaacgagacc
gccgccgccggttccaacggcaagaagggcgagctcgctgtgtccaacgacgtcgacaag
aaaggcagctatgttggtatccattccaccggtttccgcgacttcctcttgaagcctgag
cttcttcgcgccattggcgactgtggtttcgagcatccatcggaggtccaacaaacctgc
atcccccaagctcttcttggcggtgacatcatctgccaggccaagtctggtttgggcaag
actgctgttttcgtcctcgccactctgcaacaggttgagcctgtaaatggagaggtttcg
gttgtggtcatgtgccacaccagagagctggcttaccagattcgcgatgagtacaaccgt
ttcagcaaatacatgcccgacatcaagacgggcgtgttttacggcggtactcccatcaag
acagatgtggagaccctcaagaacaaggaaacctgccctcacatcatagtcggtactcct
ggtcgtctcaaggcacttgttcgcgacaaggcccttcgcctgggcagcgttcgcattttt
gttttggacgagtgcgacaaaatgctggatcaacctgacatgcgcactgacgttcaggag
gtcttccgcgtgactcctacccagaagcaggtcatgatgttctccgctacgctctctgat
gctatcaagcccatctgcagaaagttcatgcagaaccctactgagcactatgtcgacgag
gacaccaagctcacccttcacggtctccagcagtactttatcaaactgctggaaaaggag
aagaacagaaaactcaatgagcttctggacgaccttcagttcaaccaggtcatcattttc
gtcaggagcacggctcgtgcgacagaactggacaagctgttgcgcgagtgcaactttccc
tccattgccgtacactccggtgttagccaggaggaacgtatcaaacgttacaaggagttc
aaggagttcaagaagagaatctgcgtggctacggacgtttttggtcgcggcattgatatt
gagcgcatcaacctggccattaactacgatctccctgccgatgccgactcatatctccac
cgtgtaggtcgcgctggacgtttcggtaccaagggtctggccatttcgtttgtcagctcg
gaccaggatcaggaggttctcagggagattgaaaagcggtttgaagttgcgctgcctgag
ttccccaaggagggtgttgatgccagcacctacatggcttcttaa
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