Ustilaginoidea virens: 66065376
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Entry
66065376 CDS
T11247
Symbol
UV8b_04598
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
uvi Ustilaginoidea virens
Pathway
uvi03013
Nucleocytoplasmic transport
uvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
66065376 (UV8b_04598)
03015 mRNA surveillance pathway
66065376 (UV8b_04598)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66065376 (UV8b_04598)
Enzymes [BR:
uvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
66065376 (UV8b_04598)
5.6.2.5 RNA 5'-3' helicase
66065376 (UV8b_04598)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
66065376 (UV8b_04598)
mRNA cycle factors
Common to processing body (P body) and stress granule
66065376 (UV8b_04598)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
PIF1
NPHP3_N
ATPase
Viral_helicase1
NAT10_TcmA_helicase
SLFN-g3_helicase
nSTAND3
Ribosomal_S13_N
SRP54
AAA_10
AAA_25
AAA_22
PRC2_EED_ins
PhoH
AAA_16
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
66065376
NCBI-ProteinID:
XP_042998030
UniProt:
A0A8E5MHW3
LinkDB
All DBs
Position
4:join(310609..310898,310987..314044)
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AA seq
1115 aa
AA seq
DB search
MEGAFTHVGNHLISDSAAAIKADADDLSTLGPNDSLLYGKYGDGRSGRRRADDDDNQTEA
IEEDENDSLNSVAVDGMRGLKLKNSEEEKELPPHACAYCGIHSPACVVKCLTCNKWFCSA
RGNGTSTHIVNHLVRARHKEVQLHPESTLGDTVLECYNCGTKNAFLLGFIPAKSDTVVVL
LCRQPCASSTPNKDMNWDISRWEPLITERAFLDWLVSAPSDVEQLRARHLSPNTIAKLEE
MWKVEPKATVADLEKASNVDDDPDPVLLQYDDPYHYQNIFGPLVKMESDYDKKLKEAQSE
DGLVVRWDFGLNNKHLVSFNLHKIESGDVKLAVGDEMRLRYNGELREPWEGVGYVIKIPN
SQSDEVCLELRKTGNEKHVPTDLSHNFSADYVWKATSYDRMQLGMKTFAVDDMSVSGYIF
HTLLGHEVQLQPMQSKFPRKWSAPNLPELNQSQVDAIKSVLQKPLSLIQGPPGTGKTVTS
ATIIYHLAKMSGNQVLVCAPSNVAVDQLCERVHRTGLKVVRLTAKSREDVESSVTSLALH
EQVRSAEHNSELVKLSQLKNDVGELSSQDEKKFKQLTKAAEREILNNADVVCCTCVGAGD
PRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQ
SLFERLIKLQLAPIRLTTQYRMHPCLSEFPSNMFYDGSLQNGITHEQRLRKDVDFPWPNP
ETPMMFWSNLGHEEISTSGTSYLNRTEASNVEKTVTRFFKAGVKPSEIGVITPYEGQRSY
IVTTMQNSGTYKKEFYKEVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVA
LTRAKYGLVILGNPKVLSKHELWHNLLVHFKDRKCFVEGPLTNLQACLLQFSRPKVSFRQ
KNNSSHSSSSSSSNNNNNHHHHHHNNNNNTSNYYDSHYGGGGYANGRFNGGGPSGRDFDS
GSMVSYIPDDVSSIQGSAFGGTALNSAFPPMFSSFTPEQWPGLPGVSAPGRGHKGRGRAT
ESVAGESVANSELTDATSSVIGGKGVGQGGVSLGAGLHDAVTGMRPVSYTQSDRLKQYVE
SNGRMAPGSGFGRRYDDDEKSVSTAFHSQIGSGYD
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgccttcacgcatgtaggcaaccacctcatatccgactccgccgcagcaatc
aaagccgatgccgacgatctatctacactgggccccaatgacagcctactttatggcaag
tatggtgatggccgcagtggccgccgtcgcgccgatgatgacgacaaccagaccgaggcg
atagaggaggacgaaaatgacagcctcaacagtgtcgcagtcgacggtatgaggggccta
aaacttaaaaacagcgaggaggaaaaggaacttccccctcatgcttgcgcatattgcggc
attcactctcctgcctgcgtcgtcaagtgcttgacatgcaacaaatggttttgcagcgcg
aggggcaacggcacttcgacccacattgtcaatcacctggttcgagcgagacacaaggag
gttcagttgcatcccgagtccacgctaggggacaccgttttggagtgctacaactgcgga
accaagaatgcattcttgcttggcttcatcccggcaaagtcggatacggtggttgtgctt
ttgtgccgacaaccgtgcgcgtctagcacaccgaacaaggacatgaactgggacatctct
cgttgggaacccctcatcacggagcgagcattcctagattggctggtcagtgctccgtct
gatgtcgagcaactccgcgcacgccatctttcccccaatacgattgccaagctggaggag
atgtggaaagtcgagcccaaggccacggttgcagaccttgagaaggcctccaacgtcgat
gatgatccggacccagtattgctgcaatacgacgacccgtatcactaccaaaacatcttt
ggtcctctggtcaagatggagtcggactatgacaagaaactcaaggaggcacagtccgag
gacggtctggtcgttcgatgggactttggcctcaacaacaagcacctcgtgagcttcaac
ctgcacaagatcgagtctggagacgtcaagcttgccgtgggtgacgaaatgagacttcga
tacaacggcgaacttcgtgagccttgggaaggagtcggatacgtcatcaagattcccaac
agccagtctgacgaggtgtgtttggagttgcgcaagacgggaaatgagaaacacgtgccg
acggatctgtcccacaatttctctgccgactatgtctggaaggctacctcttatgaccgc
atgcagctgggcatgaaaacctttgccgtcgacgacatgagtgtctctggatacattttc
cacactcttctcggacacgaagttcagctgcagccgatgcagtccaagtttcctaggaag
tggtccgcccccaaccttcccgaactgaaccagagccaggtggatgccatcaaatctgta
ctgcagaagcctctcagcctcattcagggacctcccggcacgggcaagactgtcacctcg
gcaaccatcatctaccatcttgccaagatgagcggcaaccaggtgctcgtgtgcgctccc
tccaacgtggctgtagatcagctctgcgagcgagtccatcgcacagggctcaaggtggtt
cgcctgaccgccaaatctcgggaggacgtcgagtcctcggtgacctctctggccctgcac
gagcaggtcaggtcggcagagcacaacagcgagcttgtcaagctgtcgcagctgaagaat
gacgtgggagaactgtctagtcaagacgagaagaagttcaaacagctcaccaaggctgcc
gagcgggagattctcaacaacgcagacgtggtctgttgtacttgcgttggtgctggcgac
cctcgtctttccaagatgaagttccgaaacgtgctcatcgacgaatctacgcagtcggct
gaaccggaatgcatgatcccacttgtgcttggctgcaagcaggttgtactggtgggagat
cataagcagctgggccccgtcatcatgaacaagaaggcagccaaagccggcctgaaccag
tccttgtttgagcgcctgatcaaactgcagctggcgcccatcaggctcaccacgcagtac
cgaatgcacccgtgcctctccgagtttccgtcaaacatgttctacgacggcagcctgcag
aacggcatcacacatgagcaacgtctgagaaaggatgtcgactttccctggccaaatccc
gagactccgatgatgttctggtcgaatctaggccacgaagagatttccacctcgggaaca
tcctatctcaatcgcaccgaggcgtccaatgtcgagaagactgttacccggttcttcaag
gcaggtgtaaaaccgtccgagattggcgtcattaccccgtacgaaggccagaggagctat
attgtcacgacgatgcaaaattccggcacctataagaaggagttctacaaggaagttgag
gtcgcgtccgtcgatgcctttcagggtcgcgagaaggactttatcgttctttcctgtgtt
cgatccaacgaaaaccaaggcatcggcttcctgtccgatcctcgccgcttgaacgtggct
cttactcgtgctaaatacggcctggtaatcttgggtaaccccaaggttttgtccaagcat
gagctctggcacaacctgcttgttcacttcaaggaccgcaaatgctttgtggagggaccg
ctcaccaacctgcaagcatgcctcttgcagttcagccgccccaaggtcagtttccgccaa
aagaacaacagcagccacagcagcagcagcagcagcagcaacaacaacaacaaccaccac
caccaccaccacaacaacaacaacaacaccagcaactactacgattctcactacggtggc
ggaggatatgcaaacggcagattcaacggtggcggaccgtctgggagggactttgactcg
ggatcgatggtgtcttatattcccgacgacgtgtcctccatccaagggtccgctttcggg
ggtacggccttgaacagcgcgttcccgcccatgttttccagctttacgcccgagcagtgg
cctggtctccctggcgtatcggcgcccggacgtggtcacaagggccgtggtcgtgcaacg
gagagcgttgcgggcgagagcgtggccaattctgagctcaccgacgccactagcagcgtg
attggcggtaaaggggttgggcagggtggtgtcagcctgggcgccggcctgcacgacgcg
gtcacggggatgcggccggtttcgtacacgcagagcgacaggctgaagcagtacgtcgag
agcaacgggcgtatggcaccgggcagcggcttcggcaggcgatatgacgatgatgagaag
agcgtcagcactgcttttcatagtcagattggcagcggctacgactga
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