Ustilaginoidea virens: 66066371
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Entry
66066371 CDS
T11247
Symbol
UV8b_05594
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
uvi Ustilaginoidea virens
Pathway
uvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
66066371 (UV8b_05594)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66066371 (UV8b_05594)
03041 Spliceosome [BR:
uvi03041
]
66066371 (UV8b_05594)
03009 Ribosome biogenesis [BR:
uvi03009
]
66066371 (UV8b_05594)
03016 Transfer RNA biogenesis [BR:
uvi03016
]
66066371 (UV8b_05594)
Enzymes [BR:
uvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
66066371 (UV8b_05594)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
66066371 (UV8b_05594)
Spliceosome [BR:
uvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
66066371 (UV8b_05594)
Complex C
U4/U6.U5 tri-SnRNP related factors
66066371 (UV8b_05594)
Ribosome biogenesis [BR:
uvi03009
]
Eukaryotic type
Pre-60S particles
Helicases
66066371 (UV8b_05594)
Transfer RNA biogenesis [BR:
uvi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
66066371 (UV8b_05594)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
AAA_22
Glyco_hydro_65C
nSTAND3
Epiplasmin
Motif
Other DBs
NCBI-GeneID:
66066371
NCBI-ProteinID:
XP_042999024
UniProt:
A0A063C3D7
LinkDB
All DBs
Position
4:join(4187204..4190316,4190394..4190574)
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AA seq
1097 aa
AA seq
DB search
MDELFNVFEGKPEPQSASDSEREPQKTRTRDKTKKRKADEAMNGVAEADTSKGGAEVEMG
NAAEAEAPKAEASDDEDSDTPSQQDKKRRKKGDKADPVMTDTFQTAESREVAGAATLIPQ
ESSLVLSHNIQHQVALPPDLDYEYVPLSEHKSPENPARTWSFKLDPFQSLSVASIERDES
VLVSAHTSAGKTVVAEYAIAQCLQRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGDV
TINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDK
VRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGNGARIVVDEKG
NFNEQNFNYVMKAVEEKQGTESNDVNAKLKGKGKDKKINKGGPDEGSDMQKIVRMTIRKN
FNPVIVFNFSKRECENMAMNVGNFSLNDDSEKAMVNKVFQSAIESLSEQDRDLPQIQHLL
PLLRRGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWD
GVKRRPLTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGAQDKLNSAFYL
GYNMILNLLRIEAISPEYMLERCFHQFQNAASVPALEKELIALQQERDALSIPDEATIKD
YYQIRQQLNMYTKDMRCVIQHPSHCLSFLQPGRLVQIHNPKEAQDNVAGGLDFGWGVVVN
QTARRGPRLGEPGFEPQESYIIDVLLTISASSSDFTPGQPAGDMPPGLHPAGVDGDKMAA
VVPCLLTCVKAISQLRIFMPKDGLKAEADREQARKSLAEVKRRFPDGLPILDPLENMDIT
DDSFKKLLRKIEVLESRLLANPLHLSPMLPSLWDQYSEKVRLADKVKEKKKAIAKAHSIA
QMDELKSRKRVLRRLGFINDGEVVQLKARVACEISSTEGHELLLSELLLDRFFNELNPET
CAAVLSCFIFDEKVETQALKENLQKPYREIQAKARIIAKVSQECKLNVNEEEYVTSLKWQ
LMETVYAWAQGKPFSEICKMTNVFEGSLIRLFRRLEELLRQMAQAAKVMGNEDLTKKFEE
CLQKVRRDIVAAQSLYL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattgttcaacgtcttcgagggcaagccggagccccagagcgccagcgactcg
gagagagaacctcagaagacccgaactcgagacaagaccaaaaagcgcaaggccgatgaa
gctatgaacggcgtggcagaggcggatacgtccaagggcggcgccgaagtggaaatggga
aacgcagcagaggcagaggctccaaaagcggaggcctctgatgacgaggattcggacacg
cccagtcaacaagacaagaagcgacgaaagaagggagacaaggctgatcctgtcatgacg
gataccttccaaacggcagagtcgagagaagttgctggtgcggccacgctgatcccgcag
gagtcgtcgttggtgctttcccacaatattcaacatcaggttgctctgccaccggatctg
gactatgagtacgttcccttgtcagagcacaaatcacccgagaatcccgccaggacgtgg
agtttcaaactggaccccttccagagcctctccgtggcctctatcgaacgggacgagagt
gtgctggtttcggcacacacttctgccggcaaaacggtcgttgccgaatacgccatcgcc
caatgcctccaacgcaaccagcgagtcatctacacgagcccgatcaaggctctgagtaac
cagaagtaccgcgattttgaagccatttttggcgacgtgggcttgatgactggtgacgta
accatcaatcctaccgcgagctgcttggtcatgaccacggaaatcttgcgatccatgctg
tatcgagggtccgagattatgcgagaagtcgcttgggtcgtctttgacgagattcactac
atgcgagacaagacccgaggcgtggtctgggaggagaccatcataatgctgcccgacaag
gtacggtatgtcttcctgtctgccaccattccgaacgcctttcaattcgcggaatggatc
gcaaagattcaccatcaggcatgccacgtcgtctacacggatttccgaccgactcccctc
caaaactacttcttcccagccggtggtaacggagcacgaatcgtggtggatgaaaagggc
aacttcaacgagcagaacttcaactacgtcatgaaggcggttgaggagaagcaaggcacc
gagtcgaatgacgtgaatgcaaagctcaagggcaagggcaaggataagaagatcaacaag
ggtgggccggatgaaggttccgacatgcaaaagattgttcgcatgaccatcaggaaaaac
ttcaacccggtcatcgtcttcaactttagcaagcgagagtgcgagaacatggcaatgaac
gtcggcaacttttcgttgaacgacgactcggaaaaggccatggtgaacaaggtcttccag
agcgccatcgagagcttgtccgagcaagaccgagacctacctcagatccagcatcttcta
cccctactgaggcgaggaatcggcgtgcatcactcgggcctgctgccgattctgaaggag
acgattgagattctgtttcaagagtcgctcatcaaggtcctgtttgccaccgagacattc
tccatcggcttgaacatgcctgccaagactgtcgtcttcacgcaagtcaccaagtgggat
ggcgtcaagagacgtcccctgacctcttcagagtatatccagatggccggccgcgccgga
cgtcgtggtctcgatgctcgcggcatcgtcatcatgatgattgacgacaagctggagccg
gacaccgcaaaagagattgttacgggcgcgcaagataaactcaactcggcattctacctg
gggtacaacatgattctcaatctgctccgcatcgaggccatctcgccagagtacatgctg
gaaagatgtttccaccagtttcaaaatgccgcgagcgtgccggccctcgagaaggagctc
atagctctgcagcaggagcgggacgcgctgtcgatacccgacgaggccacgatcaaggac
tactatcagattcgtcagcagctgaacatgtacaccaaggacatgcgatgcgtcatccag
caccccagccactgcctaagctttcttcagcccgggcgtctggtgcagattcacaatccc
aaggaagcccaggataacgttgccggaggtcttgatttcgggtggggggtggtcgtcaac
caaactgcccgccgcgggcccaggcttggcgaacctggattcgaaccgcaggaatcgtac
attatcgatgtcttgctcaccatctcggcgtctagctcggactttacgcccggtcagccg
gctggcgacatgcctccgggactgcatcccgcgggcgtcgacggcgacaagatggcggca
gttgtgccgtgcttgctcacttgcgtgaaggccatcagccagctccgaatcttcatgccc
aaggacgggttgaaggccgaggcggaccgggagcaggcgcggaagtccttggcggaggtc
aagcgtcgattccccgacggcctgccgatcctcgatccgttggagaacatggacattacg
gacgactcgttcaagaagctcctgcgcaagattgaggttctggaatcgaggctgctggcc
aaccccctgcacctgtcgcccatgctgccgtctctctgggaccagtacagcgaaaaggtg
cgtctggcggacaaggtcaaggagaagaagaaggccattgccaaggcccacagcattgcg
caaatggacgagctcaagtcccgaaaacgggtgctccggcgcttgggcttcatcaacgac
ggcgaagtggtgcagctcaaagcccgagttgcctgcgagatctcgtcgaccgagggccac
gagctgctgctgtccgagctgctcctcgaccggttcttcaacgagctcaaccccgagacg
tgcgccgcggtgctcagctgcttcatctttgacgaaaaggtcgagacgcaggctctgaag
gagaacctgcagaagccctatcgtgagatccaggccaaggcacgcatcattgccaaggtc
agccaagaatgcaagctcaacgtcaacgaggaagagtacgtgacgagcctcaagtggcag
ttgatggagacggtctatgcctgggcgcaaggcaagccgttttccgagatttgcaaaatg
accaacgtgtttgaaggctcgttgatccgcctcttccgccgcctggaagagctgctgcga
cagatggcccaggctgccaaggtgatgggcaacgaagacttgaccaagaagtttgaggag
tgcctgcaaaaggtcaggagggatattgtggcggcccagagtttgtacctgtag
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integrated database retrieval system
