Ustilaginoidea virens: 66067167
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Entry
66067167 CDS
T11247
Symbol
UV8b_06390
Name
(RefSeq) uncharacterized protein
KO
K14962
COMPASS component SWD2
Organism
uvi Ustilaginoidea virens
Pathway
uvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
66067167 (UV8b_06390)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66067167 (UV8b_06390)
03036 Chromosome and associated proteins [BR:
uvi03036
]
66067167 (UV8b_06390)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
66067167 (UV8b_06390)
Chromosome and associated proteins [BR:
uvi03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
66067167 (UV8b_06390)
COMPASS/SET1 complex (yeast)
66067167 (UV8b_06390)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
NBCH_WD40
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
66067167
NCBI-ProteinID:
XP_042999822
UniProt:
A0A8E5HV65
LinkDB
All DBs
Position
5:complement(join(1884542..1885332,1885450..1885684,1885783..1885929))
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AA seq
390 aa
AA seq
DB search
MSSTPMDLDRSTGPSSLALGQSLKIQRSLDSAPPVSHLKDVISSFRPVKLLRRQDLREGR
PTPHVLSIDYDDEGELLMTSASDETIQIYNVRDGRHDKSLLSKKYGVKLAKFTHTNSSII
YASTKQNNAIRYLATHDNSFIRYFEGHESNVTDIAVHPGSDTFISCSQDNTVRLWDTQSK
NGQGQLFLRSPSLAAYDPSGMVFAIACPSSGSVLLYDVRNYDRAPFSTVDILEQCYKVDQ
QHLVKGWTKLEFSNDGKSLLVGTKGQGHFLLDAFEGNLKAYLHRPTGGTRRQAPGETPPC
DNGNAATDPRNLDSSGDCCFAPDGRFIISGSRQDIFVWDSLSSIPKGKVLEPMSTLHDRR
ETAVVAFNPRFNFFATADQDLLFWLPDPHG
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccacgcccatggacctggatcgttcgacaggcccctccagcctcgcgctcggg
cagtcattgaagattcaaaggtccttggacagcgcgccacccgtctcccacttgaaagat
gtgataagcagcttcagacctgtcaagctgcttcgacgtcaagacctgagggaaggccga
ccgactccgcatgttctctctatcgattacgacgatgaaggcgaactcctcatgacatcg
gcgagcgacgagacaatccagatttacaacgtcagggatggccgtcatgacaagagtctc
ctcagtaaaaagtatggggtcaagttggcaaagtttacgcacaccaactcgagcatcata
tatgcatctacaaaacaaaacaatgccatacgatatcttgccacccacgacaactccttt
atacggtacttcgaagggcacgaaagtaacgtgactgatattgcggtccatcccggctct
gataccttcatctcttgctcacaggacaatacggttcgactatgggatactcagtccaag
aacggacagggacagctgttcctccgatcgccgtcccttgctgcctacgatccctcgggg
atggtgtttgccatcgcatgccccagcagcggcagtgttctgctctacgacgttcgtaac
tacgacagggcgccgttctcgacggtcgatattcttgaacaatgctacaaggtagaccag
cagcacctggtcaagggttggacgaagctggaattttccaacgacggcaagtcactgctt
gtcggcaccaagggccagggccacttcttgttggatgcctttgaagggaacctcaaggcg
tacctccaccgaccaaccggtggaactaggcggcaggcgccgggggaaacgcctccctgc
gacaacggaaacgcagcaacggaccctcgcaatctggacagcagtggagattgctgcttt
gcgcctgatggtcgattcatcatcagcggatccaggcaggacatctttgtgtgggactcg
ctgtcctcgatacccaaaggtaaagtgctggaacctatgtcgacgctgcatgataggaga
gaaacggctgtcgtggccttcaatcctcggttcaacttttttgccactgcagaccaggac
ttgctcttttggctccccgatcctcatggctag
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