Ustilaginoidea virens: 66068014
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Entry
66068014 CDS
T11247
Symbol
UV8b_07237
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
uvi Ustilaginoidea virens
Pathway
uvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
uvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
66068014 (UV8b_07237)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uvi03021
]
66068014 (UV8b_07237)
03019 Messenger RNA biogenesis [BR:
uvi03019
]
66068014 (UV8b_07237)
Transcription machinery [BR:
uvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
66068014 (UV8b_07237)
Messenger RNA biogenesis [BR:
uvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
66068014 (UV8b_07237)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
zf_PCFS4
VHS
DUF7340
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
66068014
NCBI-ProteinID:
XP_043000669
UniProt:
A0A8E5MKE2
LinkDB
All DBs
Position
6:complement(join(1140860..1141240,1141323..1141518,1141630..1142474,1142547..1142999,1143072..1143233))
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AA seq
678 aa
AA seq
DB search
MASEADEVAEDYRHALEDLSSNMRFEISNLTVIARENTEHALAIAEVLQQHILKAPPSKK
LPSLYVLDSIVKNVGTPYTLYFGRNLFKTFMESYAVVDGNVRRKMEEMLKTWKDPVPGSM
DTRPVFSHELVRPIENALMKARAATMPQQGPIPGRPRSSLLPHRDTPTPPGTRGPNGPPG
PYPPQFAYPNGGRPGDPVPYHAQPQYSGILPTPQLHGSTPAIFQPPLAGPYGSIGARALA
GVSVETLSNDIQNLIVAAKAEFTQNPHDASIQNRLRALLDLQGLVQRASLPPDQLELIKN
KVTELAAVTRKAPSSHTLLAPVPAYMAPLSQPAPPPAPPPPHSASVTPNPVSATEPKPQI
TLDSLLGPGAMAALMARHAAASHSATSTPPIPDASVRSSTSLQTQAPKPASSTPKALLEQ
LRQAGMLPSSAPAKPAPPAAAPPVTPQPILPPNITSILASAKAAAVSQQGFGGVSTGSIN
EAALKQQHRPDAVAALYDNLGPPCTQCGRRFKTDEQGKRRKTAHMDWHFRVHQRTTEAEK
RGTHRSWYVDHQEWLRSREIVDSDHVAPPDEGREQTAEDEGEPQYIPVPDPSRGISNVCP
ICQEKFENKWLDTAQEWVWLDAILVGNRAFHASCHAEAARDREGTPGFPRRTPEPVLGKR
KADSSISSVKVRTLKTSV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagaagccgacgaggttgcggaggattaccgtcatgctctcgaagatctctct
tccaacatgagatttgaaatcagcaacttgacggtgattgcgcgcgagaacacggaacat
gccctggccattgccgaagttttgcagcagcatattctaaaggcacccccaagcaaaaag
ctaccgtccctctacgttttggattccattgtgaaaaacgtcggaacaccgtacacgcta
tattttggccggaacttgttcaaaacctttatggaatcctatgccgtcgtggacggtaat
gtgcgcagaaagatggaagaaatgctcaagacatggaaagatcccgtgccaggatccatg
gacacacggccagtcttttcccacgaactggttcgcccgatagagaatgccctcatgaaa
gccagggcggcaacgatgcctcaacaaggcccgatccctggacgacctcgatcctccttg
ttgcctcacagagatacccctacaccgccaggaacgcgagggccaaacggcccgcccggc
ccttatcctccgcagttcgcctaccccaacggtggtcgaccgggtgatccggttccctat
cacgcacaaccacagtattccggaatccttccaacccctcaactgcatgggtctaccccg
gccatcttccaaccacctcttgctggaccgtatgggtctataggggcaagggcattggct
ggagtaagcgtagaaacactgagtaatgacattcagaatttgattgttgccgccaaggca
gagttcactcagaacccacatgatgctagtattcaaaacagactaagagctctgctcgat
cttcaagggcttgtgcaacgcgctagcttgcctcccgatcagcttgagctcatcaagaac
aaagtaactgaacttgctgccgtgacgaggaaggccccatcatctcataccctcctcgct
ccagttccagcatacatggcgcctttaagccagccagcaccaccaccagcaccaccacca
cctcactctgcatctgtaaccccaaacccagtgtcagcgacggagccgaagcctcagatt
accctcgactctctcttgggcccgggagccatggcagcgttgatggcgaggcacgcagcg
gcgtcgcatagcgcaacatctacaccacctataccggacgcatctgtccgatcgtcgact
tctctgcagacgcaagcgcccaaaccggcgtcttcaaccccaaaggctttgttggagcaa
ctgcggcaagctggcatgctcccgtctagtgcgccagcgaaaccggcaccgccagcggcc
gctcctcccgtcacgcctcaaccaatcttgccgccgaacatcaccagcatattagcttca
gccaaagcagcagcagttagccagcagggcttcggtggcgtcagcacaggctcgataaac
gaagctgcgttgaagcagcagcatcgccctgatgctgttgcggccctttatgataatctt
ggacctccatgcacacagtgtggccgccggttcaagactgacgagcaggggaaaaggagg
aaaacggctcacatggactggcatttccgcgttcaccaacgaactaccgaagccgagaag
agaggcacgcaccggagctggtacgtggatcatcaggaatggctccgctcccgtgagatt
gtggactcggatcacgtcgcaccgccggatgagggacgggagcagacggcggaggatgaa
ggcgaaccgcagtacatcccggtacccgatccgtccaggggcatcagcaacgtgtgcccg
atttgccaggagaagtttgagaacaagtggctcgacacggcgcaggagtgggtttggctt
gacgcgatcctagtcggcaacagggcgtttcacgcctcttgccatgccgaggcagcaagg
gaccgcgagggcaccccgggcttccctcgaaggactccagagcccgttctaggcaaaagg
aaggccgacagcagcatttcatcagtcaaggttcgaacactgaagacgtcggtctag
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