KEGG   Variovorax sp. PAMC 28711: AX767_00120
Entry
AX767_00120       CDS       T04325                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vaa  Variovorax sp. PAMC 28711
Pathway
vaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AX767_00120 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vaa03021]
    AX767_00120 (rho)
   03019 Messenger RNA biogenesis [BR:vaa03019]
    AX767_00120 (rho)
Transcription machinery [BR:vaa03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AX767_00120 (rho)
Messenger RNA biogenesis [BR:vaa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AX767_00120 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 S1CSD-TOTE-2 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: AMM22963
LinkDB
Position
22699..23964
AA seq 421 aa
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMVEGEVRTPKDGERYFALTKLDKVN
DGLPESNKHKVMFENLTPLFPKEQMKLERDGVKSEENITGRVIDIIAPIGKGQRALLVAP
PKSGKTVMMQHIAHAIAANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARH
VHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKR
FLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQ
LNRSGTRREELLLAPEILQKTRILRQLMYNMDEVESMELMLKNMKATKTNVEFFDMMRRG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcacttaaacgaactcaaggcactgcacgtgtctgaagtcctcaagcaggccgaagcc
cttgagattgaaaacgtcggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgcgcgaaagcgggcgaacaggtgtttgcggacggcgtgctcgaaatcctgcccgac
ggcttcggtttcctgcgcagccccgacaccagcttcaccgccagcaccgacgacatctac
atctcgccgagccaggtgcgtcgcttcaacctgcacaccggcgacatggtcgaaggcgaa
gtgcgcacgcccaaagacggcgaacgctatttcgcgctgaccaagctcgacaaggtcaac
gacgggctgcccgagagcaacaagcacaaggtgatgttcgagaacctgacgccactgttc
cccaaggaacagatgaagctggaacgcgacggcgtcaagagcgaagagaacatcaccggc
cgtgtcatcgacatcatcgcgccgatcggcaagggccagcgcgccctgctggtggcaccg
cccaagagcggcaagacggtgatgatgcagcacatcgcgcacgccatcgcggccaactac
cccgatgtccacatgatggtgctgctcgttgacgagcgccctgaagaagtgaccgaaatg
cagcgcaccgtgaagggcgaagtcatcgcttcgaccttcgacgagcctgcagcccgccac
gtgcacgtcgccgaaatggtgatcgagcgcgccaagcgcctggtcgagctcaagaaggac
gtcgtgatcctgctcgactcgatcacccgcctcgcccgcgcctacaacaacgtggtgccc
tcgtcgggcaaggtgctgaccggtggcgttgactccaacgcgctgcagcgccccaagcgc
ttcctcggtgccgcgcgcaacgtggaagaaggcggttcgctgacgatcatcggcaccgcg
ctgatcgacaccggcagccgcatggacgaagtgatcttcgaagagttcaagggcaccggc
aactccgaaatccacctggaccgccgcctgtacgaaaagcgcgtgttcccgtcgatccag
ctcaaccgcagcggcacgcgccgcgaagaattgctgttggcgcccgagatccttcagaag
acccgcatcctgcgtcagctcatgtacaacatggacgaagtcgaatcgatggagttgatg
ctcaagaacatgaaggcgaccaagaccaacgtcgagtttttcgacatgatgcgtcgcggc
ggctga

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