Variovorax sp. PAMC 28711: AX767_00990
Help
Entry
AX767_00990 CDS
T04325
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AX767_00990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_00990
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AX767_00990
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AX767_00990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AMM23101
LinkDB
All DBs
Position
complement(179430..181553)
Genome browser
AA seq
707 aa
AA seq
DB search
MPEITEAITDTHDPAGVGPAPEGQFVKFEGSPFELFQPYPPAGDQPKAIDGLVEGVNDGE
VFQTLLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSY
YDYYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSVLERRDTVIVATVSAIYGIGTPE
DYTQMRFIMRVGDKIGQRDVIGRLIRMQYTRNEQDFSRGTFRVRGDTIDVFPAEHSELAI
RIELFDDEIESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPRDKVLGAVETIKLELAERLK
EFISQGKLVEAQRIEQRTRFDLEMLAEIGHCKGIENYSRHLSGAAPGQPPATLTDYLPKD
ALMFLDESHQMIGQLNGMYSGDRARKTTLVEYGFRLPSAMDNRPLKFDEFETRMRQAIFV
SATPAQYEKDHSGNTVEQLVRPTGLIDPEVEVRPATHQVDDVLGEIRLRVDKHERVLITT
LTKRMAEQLTDYLSDNGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIP
EVSLVAILDADKEGFLRAERSLIQTIGRAARNLNGKAILYADRMTESMKKAIDETERRRT
RQIAHNLAHGITPRSIVKQVRDLIDGVYSEKTGKEMAKLDLERAKVEDMSEKDVSREIKR
LEKLMLEHARNLEFEKAARVRDQLALLREQAFGGAGSDNIVVLTPGN
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgccagagatcactgaagccatcacagacacgcatgatcccgcaggggtcggccccgcc
cccgaagggcagttcgtcaagttcgagggctcgccgttcgagctgttccagccctatccg
cccgccggggaccagcccaaggccatcgacggactggtcgagggcgtgaacgacggcgag
gtgttccagacgcttctgggcgtcacgggctcgggcaagacgttcaccatggcgaacgtg
atcgcgcgactgggccggccggccatcgtgttcgcgcccaacaagacgctggcggcccag
ctctacagcgaattccgcgaattctttccgaagaatgccgtcgagtacttcgtgagctac
tacgactactaccagcccgaagcctacgtgccgcagcgcgacctgttcatcgaaaaggac
agctcgatcaacgagcacatcgagcagatgcgcctgtcggcgaccaagagcgtgctggag
cgacgcgacacggtgatcgtcgcgacggtgagcgcgatctacggcatcggcacgccggag
gactacacgcagatgcgtttcatcatgcgcgtcggcgacaagattgggcagcgcgacgtg
atcggccgcctgatccgcatgcagtacacgcgcaacgagcaggatttctcgcgtggcacc
tttcgcgtgcgcggcgacaccatcgacgtgttccccgccgagcacagcgaactggcgatc
cgcatcgagctgttcgacgacgagatcgaatcgctccagctgttcgatcccctcaccggc
cgcatccgtcagaagattccgcgcttcacggtgtacccgtcgagccactacgtcacgccg
cgcgacaaggtattgggcgcggtggagaccatcaagctcgaactggccgaacggctcaag
gaattcatcagccagggcaagctcgtggaggcgcagcgcatcgagcagcgcacgcgcttc
gacctggaaatgctggccgagatcggccactgcaagggcatcgagaactactcacggcat
ctttcgggcgcggcgccgggacagccgcccgcgacgctgaccgactacctccccaaggac
gcgctgatgtttctcgatgaaagccatcagatgatcggccagctgaacggcatgtacagc
ggcgaccgcgcgcgcaagaccacgctggtcgaatacggtttccggttgccttcggccatg
gacaaccgcccgctcaagttcgacgagttcgagacgcggatgcgccaggcgatcttcgta
tcagccacgccggcgcagtacgaaaaggaccattcgggcaacaccgtcgagcaactggtg
cggcccaccggcctgatcgatcccgaggtggaagtgcggccggccacgcaccaggtcgac
gatgtgttgggcgagatccggctgcgcgtcgacaagcacgagcgggtgctgatcaccacg
ctgaccaagcggatggccgagcaactcaccgattacctgagcgacaacggcgtcaaggtg
cgctacctgcacagcgacatcgacacggtggagcgggtggaaatcctgcgcgacctccgg
ttgggcacgttcgacgtgctggtcggcatcaacctgctgcgcgaaggcctggacattccg
gaggtctcgctggtcgcgatcctcgatgcggacaaggaaggcttcttgcgggccgagcgc
tcgctcatccagacaatcgggcgtgcggcacgcaacctgaacggcaaggcgatcctgtat
gccgaccgcatgacggagtccatgaaaaaggcgatcgacgagaccgagcgccgccgcacc
aggcaaatcgcgcacaacctggcgcacggcatcacgccgcgcagcatcgtgaaacaggtg
cgcgacctgatcgatggcgtgtacagcgagaaaacaggcaaggagatggccaagctggat
ctggagcgcgccaaggtcgaggacatgagcgagaaggacgtgtcgcgcgaaatcaagcgg
ctcgaaaagctcatgctggaacacgcccgcaatctcgaatttgagaaggcggcgcgcgtg
cgcgatcagctggccctgctgcgcgagcaggcgttcggcggggcgggcagcgacaacatc
gtggtgctgacgccgggcaattga
DBGET
integrated database retrieval system
