Variovorax sp. PAMC 28711: AX767_03085
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Entry
AX767_03085 CDS
T04325
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AX767_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaa03019
]
AX767_03085
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AX767_03085
Messenger RNA biogenesis [BR:
vaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AX767_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMM23452
UniProt:
A0A126ZDB1
LinkDB
All DBs
Position
594504..596285
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AA seq
593 aa
AA seq
DB search
MNFEELKLAPAILKAVLEHGYDTPTPIQAQAIPVVLDGHDLLGGAQTGTGKTAAFTLPML
HKLTMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLESTVIFGGVGMNPQ
ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQILVLDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLAAQLLKNPQSVQVTPRNTTVQRITQVIHPVGRGKKKALLAH
IINEHKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNFEIPNVSEDYVHRIGRTGRAGNSGEAVSFVCLDEEGFMQ
EIERFTKQQIPVQIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTEM
LTRVRENKAGQGGGGARPNNGGGGAPRRGPAGGGAGNGGNGGNGGRNAAGRGPAPRGPGG
PRGPGGPGAPRAPQGQGQRPPARHNPAQGGSAHALYDERQPSYHGNSHSPTQANQVAHLR
AEAGESMAQGQPDPLRTSVDSMGGGRGRRQGGGGGGGYGGNRSGGGGRSFNNR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaagaactgaagttggctcctgccatcttgaaggcagtgcttgagcacggc
tacgacacccccacccccatccaggcccaggcgatccccgtcgtgctcgatggtcacgac
ctgttgggcggcgcccagaccggtaccggcaagacggcggctttcacgctgccgatgctg
cacaagctcaccatgagccgcagcgcgaccaacaagttcggcggcaccggcatccgtgcc
ctggtgctcacccccacccgcgaactcgccgcacaggtcgaggaatcggttcgcacgtac
ggcaagtacttgcaactcgagtcgaccgtgatcttcggcggcgtcggcatgaacccgcag
atcagcaaactcaagaagggtgtcgacatcctcgtggcgacgccgggccgcctgctcgac
ctgcagcagcaaggcatgctcgacctgtcgcaagtgcagattctcgtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaagatcctcgcgctggtgccc
aaggaaaagcagagcctgctgttctccgccaccttcagcgacgagattcgcgacctggct
gcgcagctgctcaagaacccgcaaagcgtgcaggtcacgccgcgcaacacaaccgtccag
cgcatcacgcaggtgatccatccggtcggccgcggcaagaagaaggcgctgctcgcgcac
atcatcaacgagcacaagtggagccaggtgctcgtgttcacgcgcaccaagttcggcgcc
aacagcgtggctgaattcctgaccaagaacggcatcgaggccatggccctgcacggcaac
aagagccagagcgcgcgcacgcaggcactcgccggcttcaagagcggtgacatccgcgcc
ctggtggccaccgacatcgcggcccgcggcatcgacatcgacgagctgccgcacgtcgtc
aacttcgaaatcccgaacgtcagcgaagactacgtgcaccgcatcggccgcaccggccgc
gcgggcaacagcggcgaggccgtgagcttcgtctgcctggacgaagaaggcttcatgcag
gagatcgagcgcttcaccaagcagcagatcccggtgcagatcgtcgaaggcttcggcccc
gaagaaggcgaacgcgccgaaccgatcgccatgggtcgccagaccatctggggcggtgca
ggccgtccgccaagccgcgacgtgatgcaggcggctgccaaggccgcccgcaccgaaatg
ctcacccgcgttcgcgagaacaaggcaggccaaggcggcggcggtgcgcgtccgaacaac
ggcggtggcggtgcgccgcgccgtgggcctgcgggcggtggcgccggcaacggtggcaat
ggtggcaacggcggtcgcaatgccgccggccgaggcccggcgccgcgtggccccggcggc
ccgcgcggtcccggcggcccgggtgcgcctcgcgcgccccagggacaaggccagcgtcct
ccggcgcgccacaacccggcgcagggcggcagcgcccatgcgctgtacgacgagcgtcag
cccagctatcacggcaacagccacagcccgacgcaggccaatcaggtcgcgcatctgcgc
gccgaagccggcgaaagcatggcccagggccagccggatccgttgcgcaccagcgtcgac
agcatgggcggcggccgcggtcgtcgccagggcggcggcggcggtggtggctacggcggc
aaccgttcgggcggcggtggccggtcgttcaacaaccgctga
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