Variovorax sp. PAMC 28711: AX767_04150
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Entry
AX767_04150 CDS
T04325
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AX767_04150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaa03019
]
AX767_04150
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AX767_04150
Messenger RNA biogenesis [BR:
vaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AX767_04150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMM23622
LinkDB
All DBs
Position
complement(802807..804288)
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AA seq
493 aa
AA seq
DB search
MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFALP
LLQRMMAHENTSTSPARHPVRALVLLPTRELAVQVAQQVELYAKYTNLRSAVVFGGMDMR
PQTVELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKKRITLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQHFYSVGDDDKRRAL
KQIIQQRGITQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEV
DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDAR
LVADIEKLIKKKIELEAVEFAEDMPRGRINDGRRHWREEGEAGDARDVLDQPRERAEPRP
VRGSSAGGGGRPHRAPSAPRDPFFDQPYEAGQPNPEATPAWEAAAKGAPARGISANIKTK
RKVAALFKTSESS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgacaagctctttttccaatctttcgctggcggaaccgctggcgcgcgccgtagccgaa
atgggctacgagaccatgacacccatccaggagcaggccatcccggtcgtgctctccggg
caggacgtgatgggcgccgcgcaaaccggcaccggcaagaccgccgctttcgcgcttccg
ctgctgcagcgaatgatggcgcacgagaacacctccacttcgccggcgcgccatcccgtg
cgtgcgctggtgctgctgccgacccgcgaattggccgtgcaggtcgcgcagcaggtcgag
ctgtacgccaagtacaccaacctgcgcagcgcggtggtgttcggcggcatggacatgagg
ccgcagaccgtcgagctcaaaaagggcgtcgaagtgctcgtcgccacgccgggccggctg
ctcgaccacatcgaagcgaagaacgcggtgttgaaccaggtcgagtacgtggtgctcgac
gaggccgaccggatgctcgacatcggctttttgcccgatctgcagcgcatcctgagctac
ctgccgaagaagcgcatcacgctgcttttctcggccacgttctcgcctgaaatcaagcga
ctggccggcagctacctgcaggacccggtcaccatcgaagtggcgcggccgaacgagacc
gcctccactgtcgaacagcatttctacagcgtgggcgacgacgacaagcggcgcgcactc
aagcagatcatccagcagcgcggcatcacgcaggctttcgtcttcgtgaacagcaagctg
ggttgtgcccggctggcacgctcgctcgaacgcgaaggcctcaagaccaccgcgctgcat
ggcgacaagagccaggacgaacgcctgaaggcgctcgacgcgttcaagaagggcgaggtc
gacttgctcgtctgcaccgacgtcgcggcgcgcggcctggacatcaaggacgtgccggcg
gtcttcaacttcgacattccgttcaacgccgaagactacgtgcaccgcatcggccgcact
ggccgtgccggtgcctcgggtctggcggtgagcttcgcgagcggcggcaacgatgcccgg
ctcgtcgctgacatcgaaaagctcatcaagaaaaagatcgagctggaagccgtcgagttc
gcagaagacatgccgcgcggccgcatcaacgacggccgccgccattggcgcgaagaaggc
gaagccggtgacgcacgcgatgtgctcgaccagccacgcgaacgggccgagccacgaccc
gtgcgcggcagcagtgccggtggcggcggacggccgcaccgcgcgccgtcggcgccgcgc
gatccgttcttcgaccagccctacgaagcgggccagccgaatccggaagccacgccggcc
tgggaagcggccgccaagggcgcaccggcgcgtggcatttccgccaacatcaagaccaag
cggaaggtcgctgcgctcttcaagaccagcgaatcgagctga
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