Variovorax sp. PAMC 28711: AX767_06845
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Entry
AX767_06845 CDS
T04325
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vaa
Variovorax sp. PAMC 28711
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vaa03016
]
AX767_06845
Enzymes [BR:
vaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AX767_06845
Transfer RNA biogenesis [BR:
vaa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AX767_06845
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AMM24094
UniProt:
A0A126ZBZ4
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All DBs
Position
1368879..1370930
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AA seq
683 aa
AA seq
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MFVLFEEAGKYLGGRLLSEAEASAQVELDTGKRVKVKSVNIVLRFEKPSPAELIAEARTL
AATMDLDLAWEFAADGEFGFADLASDYFSDKPTLVQQAAALFALFEAPHYFRRAGKGRFK
KAPAEIVQQALAAIEKKKLVTAQIADWAVQLADGVCPPPIREQLYKILFKPDKNAPEYKA
VVDASRASQTPPLELLERAGAIDSPYQFHWRRFLFENFPKGTTFPALQAPVIADELPVAT
AQAFSIDDSQTTEIDDALSVQGLGSGTVLVGVHIAAPGLALVPGSAIDQVARARMSTVYM
PGYKITMLPDDVVAAYTLQEGRDCPAVSLYATFDEATLELRGTETKLERVPIVANLRHDQ
LDAVVTQPWLEDGAFTSENTHEAASRLREPLSFLFRLAKHLKAQREVVRGKPENFNRPDY
NFRLTGNDGEPQGHEPVQITTRQRGAPLDLIVSEAMILANSSWGAWLGELGVPGLYRSQA
SMAPGVKVRMGTRSLPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGKTAALAAPF
KPKDADLFSILSGFDAAYATYNAYQGGMERFWTLKYLQQQGITELTATVVKDIQNGALVR
ADSLPLVFPVAGQQERGAHVRVKLGEIDEIALDVHGTVIERIDVPADAMADDDGGEEEEV
AGPIAIAVDMSDSEAASPEPAAG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattgtttgaagaagccgggaaatacctcggcggccggctgttgtcggaagcc
gaagcctcggcacaggtcgagctcgacaccggcaagcgcgtcaaggtcaagagcgtcaac
atcgtgttgcgcttcgagaagccgtcgcccgccgaattgatcgccgaggcgcgcacgctc
gccgccaccatggacctggacctcgcctgggaattcgcggcggacggcgagttcggcttt
gccgacctggcgtcggactatttcagcgacaagccgacgctcgtgcagcaggccgccgcg
ctgttcgcgctgttcgaggcgccgcactacttccggcgcgccggcaagggccgcttcaag
aaagcgccggccgagatcgttcagcaggcgctcgccgccatcgagaagaagaagctcgtc
accgcgcaaatcgccgactgggcggtgcagctggccgatggcgtctgcccgccgccgatc
cgcgagcagctctacaagatcctcttcaagcccgacaagaacgcgcccgagtacaaggcc
gtggtcgacgcgtcgcgtgcgtcgcaaaccccgccgctcgaactgctggagcgggcgggc
gccatcgattcgccctaccagttccactggcgccgcttcctcttcgagaactttcccaag
ggcaccaccttcccggcgttgcaggcgccggtcatcgccgacgaattgcccgtcgccacc
gcgcaggcgttctcgatcgacgattcgcagaccactgaaatcgacgatgcactgtcggtg
caagggctgggcagcggcacggtgctggtgggcgtgcacatcgccgcgccgggcctggcg
ctggtgccgggcagcgcgatcgaccaggtcgcacgcgcccgcatgtcgaccgtctacatg
ccgggctacaagatcacgatgctgcccgacgacgtcgtggccgcctacacgctgcaagaa
ggccgcgactgcccggccgtgtcgctctacgccaccttcgacgaagcgacgctcgaactg
cgcggcaccgagacgaagctcgagcgcgtgccgatcgtcgccaacctgcgccatgaccag
ctcgatgcggtggtcacgcagccctggctcgaagacggcgcattcaccagcgaaaacacg
cacgaagcggcgtcgcgactgcgcgagccgctgtcgtttctgttccgcctggcgaagcac
ctgaaggcgcagcgcgaggtggtgcgcggcaaaccggagaacttcaaccggcccgactac
aacttccgcctcaccggcaacgacggcgaaccccaaggccacgagccggtgcagatcacc
acgcgccagcgcggcgcaccgctcgacctgatcgtctcggaagcgatgatcctggccaac
agcagctggggcgcctggctcggcgagctcggcgtgcccggcctctaccgcagccaggcc
agcatggcgcccggcgtgaaggtgcgcatgggcacgcgttcgctgccgcacgccggcctc
ggggtgaagagctacgcgtggagcacctcgccgctgcgccgctacaccgacctggtgaac
cagtggcagatcatcgcggcggcgcggcacggcaagaccgctgcgctggccgcgcccttc
aagccgaaagatgccgatctgttctcgatcctctccggattcgacgcggcctacgcgacc
tacaacgcctaccagggcggcatggagcgcttctggacgctcaagtatttgcagcagcaa
ggcatcaccgaactcactgcgaccgtggtcaaggacatccagaacggcgcgctggtgcgt
gccgactcgttgccgctggtcttcccggtggcggggcagcaggagcgcggcgcgcacgtg
cgcgtgaagctgggcgagatcgacgagatcgcgctcgacgtgcacggcacggtgatcgaa
cgcatcgatgtcccggccgacgccatggccgacgatgacggcggcgaggaagaagaagtg
gccggtccgatcgccatcgcggtcgacatgagcgacagcgaggccgcctcgcccgagccc
gccgccggatga
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