Variovorax sp. PAMC 28711: AX767_10415
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Entry
AX767_10415 CDS
T04325
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AX767_10415
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vaa02000
]
AX767_10415
Transporters [BR:
vaa02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
AX767_10415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_6
SBP_bac_11
AcrIIA4
Motif
Other DBs
NCBI-ProteinID:
AMM24720
LinkDB
All DBs
Position
2108554..2109834
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AA seq
426 aa
AA seq
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MSDPIDSFANGVKRRTLLQGATGMAGILAAGVAPFVQAQEKIVLRYLGTAVNQDKAIADK
FKADTGIEIQYVAVTTDDVTKRAVTAPNSFDLIDTEFFSLKKIVPTGNLKGIDSKRVKNA
DKITSLFTKGEVAGKKVGDQGTAPVKVIYLEGEKSKVFAKSATQFMSLIPTTYNADTLGI
RPDLIKRPISSWAELLNPEFKGKTAILNIPSIGIMDAAMVVEAKGIHKYKDKGNMTKAEI
DLTIKTLIEAKKAGQFRALWKDFNESVNLMASGEVVIQSMWSPAVTAVRSKGIDCTFQPL
KEGYRAWASGFGLPATLSGKKLDGAYEFINWFLDGWAGAYLNRQGYYSAVLDTAKTKMEG
YEWAYWMEGKPAAQDIKSPQGDVIAKAGSVRDGGSYEQRMGGIACWNAVMDENEYMVRKW
NEFVAA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacccgatcgactctttcgccaatggcgtcaagcgccgcaccctcttgcaaggc
gccaccggcatggccggcatcctggccgcaggcgttgcgcccttcgtgcaggcgcaggaa
aagatcgtgctgcgctacctgggcaccgcggtgaaccaggacaaggcgatcgccgacaag
ttcaaggccgacaccggcatcgagatccagtacgtggccgtgaccaccgacgacgtgacc
aaacgcgccgtcaccgcacccaacagcttcgacctgatcgacaccgagttcttctcgctc
aagaagatcgtgccgaccggcaacctcaagggcatcgacagcaagcgcgtgaagaacgcc
gacaagatcacctcgctgttcaccaagggcgaagtggccggcaagaaggtgggcgaccag
ggcacggcgccggtcaaggtgatctacctcgaaggcgagaaaagcaaggtcttcgccaag
tcggccacgcagttcatgtcgctcatcccgaccacctacaacgccgacacgctgggcatc
cgacccgacctcatcaagcgcccgatctcttcgtgggccgaactgctgaaccccgagttc
aagggcaagactgcgatcctgaacattccgtcgatcggcatcatggacgcggcgatggtg
gtggaggccaagggcatccacaagtacaaggacaagggcaacatgaccaaggccgagatc
gacctgacgatcaagaccttgatcgaagccaagaaggccggccagttccgcgcgctgtgg
aaggacttcaacgagtcggtgaacctgatggcgtcgggcgaagtcgtgatccagtcgatg
tggtcgccggccgtgacggcggtgcgcagcaagggcatcgactgcaccttccagccgctc
aaggaagggtatcgcgcctgggcctcgggcttcggcctgccggccacgctctcgggcaag
aagctcgacggtgcctacgaattcatcaactggttcctcgacggctgggccggcgcgtac
ctcaaccgccagggctactacagcgccgtgctcgacaccgccaagaccaagatggaaggc
tacgagtgggcgtactggatggaaggcaagccggccgcccaggacatcaagagcccgcag
ggcgacgtgatcgccaaggccggttcggtgcgcgacggcggcagctacgaacagcgcatg
ggcggcatcgcctgctggaacgcggtgatggacgagaacgaatacatggtcaggaagtgg
aacgagttcgtcgcggcctga
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