Variovorax sp. PAMC 28711: AX767_10945
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Entry
AX767_10945 CDS
T04325
Name
(GenBank) ATP-dependent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vaa
Variovorax sp. PAMC 28711
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vaa03009
]
AX767_10945
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AX767_10945
Ribosome biogenesis [BR:
vaa03009
]
Prokaryotic type
rRNA helicases
AX767_10945
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
AAA_30
P-loop_SecA
ERCC3_RAD25_C
BON
Motif
Other DBs
NCBI-ProteinID:
AMM24813
UniProt:
A0A126ZCI6
LinkDB
All DBs
Position
complement(2213893..2215296)
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AA seq
467 aa
AA seq
DB search
MSSSPAADSFSTLPLTPQMLANLTRLGYTQMTPIQAAALPPALLGKDLIAQAMTGSGKTA
AFALALLANLNPRRFAVQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQ
IASLEHGAHIVVGTPGRLMDHLERGNLDLSALNTLVLDEADRMLDMGFFEDIVKVARQCP
KERQTLLFSATYPDGIAKLSAQFMKSPQQITVQAQHAGSTIRQRWYEVKESERLHTVCLM
LDHFRPISTIAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFANRSCSVL
VATDVAARGLDIAQLEAVINVDVTPDSEIHIHRIGRTGRAGAEGLALNLASMDEMGCVGK
IEVLQSRASEWHPVAELTPGEGKPLQPPMATLQIVGGRKEKIRAGDVLGALTGDCGYAKE
QVGKINVNEFSTYVAVERSIAAEAARKLASGRVKGKTVKVRLLEDER
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttctcccgccgccgacagcttttccacgttgccgctcacgccgcagatgctg
gccaacctgacccggctcggctacacgcaaatgacgccgatccaggcggctgcgctgccg
ccggcgctgctcggcaaggacctgatcgcccaggccatgaccggcagcggcaaaacggcc
gctttcgcgctggcgctgctcgccaacctgaatccgcgccgctttgccgtgcaggcgatg
gtgctgtgcccgacgcgcgaactggccgaccaggtcacgaccgagatccgccggctggcg
cgcgccgaggagaacatcaaggtcgtcacgctgtgcggcggtgtcgcgctgcgcgggcag
atcgcgagcctcgagcacggcgcgcacatcgtggtgggcacaccgggccgcctgatggac
catctggagcgcggcaacctcgacctttcggcgctcaacacgctggtgctcgacgaagcc
gatcgcatgctggacatgggcttcttcgaagacatcgtcaaggtcgcgcgccaatgcccg
aaggagcgccagaccttgttgttctcggcgacctatcccgacggcatcgcgaagctcagt
gcgcagttcatgaagagcccgcaacagatcacggtgcaggcgcaacacgccggcagcacg
atccgccagcgctggtacgaggtgaaggagagcgagcggctgcacacggtatgcctgatg
ctcgaccacttccgtccgatcagcacgatcgcgttctgcaacaccaagcagcagtgccgc
gacctggtcgaagtgctgcaagggcagggcttcagtgcgctggcgctcttcggcgagctc
gaacaacgcgagcgcgatcaggtgctggtgcagttcgccaaccgcagctgctcggtgctc
gtggccaccgacgtggcggcgcgcggactcgacattgcgcagttggaggcggtcatcaac
gtcgacgtgacgcccgactctgaaatccacatccaccgcatcggccgcaccggccgggcg
ggggccgaggggctggcgctcaatctcgccagcatggacgagatgggctgcgtcggaaag
atcgaggtgctgcagagccgcgcatccgaatggcatccggtggccgaattgacgccgggc
gagggcaagcccctgcagccaccgatggccacgctgcagatcgtcggcggtcgcaaggaa
aagatccgtgccggcgacgtcctgggcgcgctcaccggcgactgtggctatgccaaggag
caggtcggcaagatcaacgtgaacgagttctcgacctatgtcgcggtggagcgcagcatc
gccgccgaagccgcacgcaagctggcgagcggtcgcgtcaagggcaagacggtgaaagtg
cgactgctcgaagacgagcgctag
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