Variovorax sp. PAMC 28711: AX767_12780
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Entry
AX767_12780 CDS
T04325
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AX767_12780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vaa03021
]
AX767_12780
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_12780
Enzymes [BR:
vaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AX767_12780
Transcription machinery [BR:
vaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AX767_12780
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AX767_12780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMM25140
UniProt:
A0A126ZDC0
LinkDB
All DBs
Position
2623989..2628221
Genome browser
AA seq
1410 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAISIRMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKRDIMSEDDFDAKRKEYGDEFTAKM
GAEGIKDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPNWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPIM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDADVV
ELTAKVAVRITEYAKDKETGEFTASTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHDIIERSAKEV
KEIEKQYVSGLVTSGERYNKVVDIWGKAGDDVSRVMMAKLSKEKTTDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVIEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RSAAEDVLHPENRAVLLKAGEMFDEDNIEVLEAQGVDEVKVRTALTCETRFGICATCYGR
DLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGSIGFN
ATMRYVTNSKSELVVISRSGEIVIHDEHGRERERHKVPYGAILAIKADQQVKAGHVLANW
DPLTRPIITEFAGKAQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGATKVVRPQVKLI
DASGVEVKIPGTDHSVTIGFPIGSLVQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGGVYEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNIGDTNYISGEQVERSEMLNTNDALRAADKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARRAKDAMDDAERRA
IAESEAAELAGQSEEATTATVDAGEGAAAE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcattactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
agcatccgcatggcttcgccagagaagatccgctcgtggtctttcggcgaagtgaagaag
ccggaaacgatcaactaccgcaccttcaagcccgaacgcgacggcctgttctgcgccaag
atcttcggccccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggtgtcatttgcgagaagtgcggcgttgaagtcacgcagaccaaggttcgccgcgag
cgcatgggtcacatcgacctggccgcaccgtgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtttgggcctggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtat
ttcgaagcctatgtgatcaccgaccccggcatgaccccgctgaagaagcgcgacatcatg
tcggaggacgacttcgacgccaagcgcaaggaatacggtgacgagttcaccgccaagatg
ggcgccgaaggtatcaaggacctgctggaaggcatcgagctcgacagcgagatcgaacgc
ctgcggggcgacctgaccggctccgaagtcaaggtcaagaagaactccaagcgcctcaag
gtgctcgaggctttccgcaagtcgggcatcaagcccaactggatggtgctcgacgtgctg
ccagtgttgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaattcgcgtctgcgccgcctg
ctggagctcaaggccccggaaatcattgcgcgcaatgagaagcggatgctgcaggaagcg
gtcgactcgctgctggacaacggtcgtcgcggcaaggccatgacgggcgccaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacttg
ctgggcaagcgcgtcgactactcgggccgctcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcttgcccaagctgatggcgctcgaactgttcaagccgttcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtcgaa
tccggcacgccggtggtgtgggacatcctggaagaggtgatcaaagagcacccgatcatg
ctgaaccgtgcgcccacgctgcaccgtttgggcatccaggccttcgagccgatcctgatc
gaaggcaaggcgatccagctgcacccgctcgtttgcgcggcgttcaacgccgacttcgac
ggtgaccagatggccgtccacgtgccgttgtcggtcgaagcgcagatggaagcccgcacc
ctgatgctggcctccaacaacgtgctgttcccggccaacggcgaaccgtcgatcgtgccg
tcgcaagacgtggtgctgggtctgtactacacgacccgcgaccgcatcaacggcaagggc
gagggcctgatcttctccgacatcggcgaagtccagcgcgcgctcgacgccgacgtggtc
gagctcaccgccaaggttgcagtgcgcatcaccgagtacgccaaggacaaggagaccggt
gagttcaccgcgtccacgtcgctggtcgacacgaccgtgggccgtgcattgctgtccgag
atcctgccgaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtctcgttccgcaagtgcggcctgaaagagaccgtggtgttcgcc
gacaagctgctgcagaacggcttccgtctcgcgacgaaggccggtatctccatcgccatc
gacgacatgctcgtgccggctgaaaagcacgacatcatcgagcgctcggccaaggaagtg
aaggagatcgaaaagcaatacgtctccggtctcgtgacctccggcgaacgctacaacaag
gtggtggacatctggggcaaggccggcgacgacgtctcgcgcgtgatgatggccaagctc
tcgaaagagaagacgaccgaccgtcatggcaaggaagtcgagcaggaatcgttcaactcg
atctacatgatggccgactcgggtgcgcgcggctccgctgcgcagatccgccaggtcgcc
ggcatgcgcggcctgatggccaagcctgacggctcgatcatcgagacgcccatcaccgcg
aacttccgcgaaggtctgaacgtgctggagtacttcatctccacccatggtgcccgcaag
ggtctggccgacaccgcgctgaagaccgcgaactcgggctacctgacgcgtcgtctggtc
gacgtgacgcaggacttggtggtgatcgaacaggactgcggcacgcacggcggttacctg
atgcgcgccatcgtcgaaggcggtgaagtcatcgaatcgctgcgcgaccgaatcctcggc
cgctcggcagccgaagacgtgctgcatccggaaaaccgggccgtgctgctcaaggccggc
gagatgttcgacgaagacaacatcgaagtgctggaagcccagggcgtcgacgaagtcaag
gtgcgcaccgcgctcacgtgcgaaacgcgcttcggcatctgcgcgacctgctacggccgc
gacctgggtcgtggcggcctgatcaacatcggcgaagcggtcggcgtgatcgccgcgcag
tcgattggcgagcccggcacgcagctgacgatgcggaccttccacatcggcggtgcggca
tcgcgtgcggcggtcgcttccagcgtggaagccaagtcgaacggttcgatcggcttcaac
gcgacgatgcgctacgtgaccaatagcaagagcgagttggtcgtcatctcgcgttcgggc
gaaatcgtgattcacgacgagcacggccgcgagcgtgaacgccacaaggtgccttacggc
gccatcctggcgatcaaggcagatcagcaggtcaaggccggccacgtgttggccaactgg
gatcccctcacgcgcccgatcatcactgagttcgccggcaaggcgcagttcgagaacgtc
gaagaaggtctcaccgtcgccaagcaggtggacgaagtgaccggtctgtcgacgctggtc
gtgatcgatccgaagcgccgcggcgccaccaaggtcgtgcgtccgcaggtcaagctgatc
gatgcctcgggcgtcgaggtgaagatccctggcaccgaccactcggtgacgatcggcttc
ccgatcggctcgctggttcaggtgcgcgacggccaggatgtgggccccggcgaagtgctg
gcccgcattccggtcgaaggccagaagacgcgcgacatcaccggcggtctgccgcgggtg
gccgagctgttcgaagcccgctcgccgaaggacaagggcatgctggccgagatgaccggt
accgtgtcgttcggcaaggagaccaagggcaagattcgcctgcagatcaccgatcccgaa
ggcggcgtctacgaagacctcgtgcccaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgagtccgtggtcgacggtccggccgatccgcaggacatcctgcgc
ctgctgggctccgaagaactcgcgcgctacatcgtggacgaagtgcaggacgtgtaccgt
ttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgt
cgcgtcgtggtggacaacatcggcgacacgaactacatctccggcgaacaggtcgaacgc
agcgaaatgctcaacaccaacgacgccctgcgcgccgctgacaagatccccgcgacgttc
accaacctgctgctcggtatcacgaaggcctcgctctcgaccgactcgttcatctccgcg
gcgtccttccaggaaacgacgcgcgtgctgaccgaagccgcgatcatgggcaagcgcgac
gagctgcgcggtctgaaggaaaacgtcatcgtcggccgcctgattcctgcgggcaccggc
atggcgtaccaccaggcacgccgggccaaggacgcgatggacgatgccgagcgccgcgcg
atcgccgaatcggaagccgccgaactggccggccagtccgaggaagcgacgaccgcgacg
gtcgacgctggcgaaggcgctgcagccgaataa
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integrated database retrieval system
