Variovorax sp. PAMC 28711: AX767_15605
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Entry
AX767_15605 CDS
T04325
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03420
Nucleotide excision repair
vaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AX767_15605
03430 Mismatch repair
AX767_15605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_15605
Enzymes [BR:
vaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AX767_15605
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AX767_15605
MMR (mismatch excision repair)
Other MMR factors
AX767_15605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMM25623
LinkDB
All DBs
Position
3223890..3226286
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AA seq
798 aa
AA seq
DB search
MFTDTAPRTDLPLLQNLNPEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVS
PGGILAVTFTNKAAKEMMTRLTAMLPVNVRGMWIGTFHGLCNRLLRAHWRLASLPSTFQI
LDTQDQLSAIKRLMKQYNVDDERFPAKQTQWFIAGAKEDGLRPKDVEIRSDDDRKKVELY
QLYEEQCQREGVVDFGELMLRSYELLRDNDPVREHYQRRFRHVLIDEFQDTNRLQYAWIK
MLSGNTREGRFVPGDSSVIAVGDDDQSIYAFRGARVGNMADFVREFAVSHQIKLEQNYRS
YSNILDSANALISHNTKRLGKNLRTDQGPGEPVRVYESTSDFAEAQWMVEEMRQLVREGF
DRKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDT
SFLRIVNFPPRGIGARTIEQLQDAARAYDNGKGRSLHDAVHAVPGKAGANLTGFVAKIDV
LREQTQNISLREIIELILDHSGLIEHYKADREGADRIENLEELVNAAESFVTQEGFGRDA
VALPIDELRQSPASQGLNPNLPVLDEAMELAPDAETGETLSPLAAFLTHAALESGDNQAQ
AGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENAMSDHESLEEERRLMYVAITRARK
RLYMSHSQTRMLHGQTRYNVKSRFYEELPEGALKWLTPKNQGFAPSAFGYGGGYATSRPG
GGASSSYAKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVLGLEGTGDDARAQVKF
VRHGVKWLALSVAKLTPV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgttcaccgataccgcgccgcgcaccgacctgccactgctccagaacctcaacccggag
caactcgccgcagtcaccttgccggccggcaacgcgctgatcctggccggggcaggctcc
ggcaagacgcgggtactcaccacccgcatcgcctggctgctgcagaccggccaggtctcg
cccggcggcatcctggccgtgaccttcaccaacaaggccgccaaggaaatgatgacgcgg
ctgacggcgatgctgcccgtcaacgtacgcggcatgtggatcggcaccttccacggtctg
tgcaaccggctcctgcgcgcgcactggcggctcgcgagcctgccgtccaccttccagatc
ctcgacacgcaagaccagctttcggccatcaagcggctcatgaagcagtacaacgtcgac
gatgagcgctttcccgccaagcagacccagtggttcatcgccggcgcgaaagaagatggc
ctgcgtccgaaggatgtcgagattcgcagcgacgacgaccgcaagaaggtcgagctctac
cagctgtacgaagagcaatgccagcgcgaaggcgtcgtcgatttcggcgagctcatgctg
cgcagctacgaattgctgcgcgacaacgacccggtgcgcgagcactaccagcggcgtttt
cgccatgtgctgatcgacgagttccaggacaccaaccgtctccagtacgcgtggatcaag
atgctgtcgggcaacacgcgcgagggccgtttcgtgccgggcgacagcagcgtgatcgcg
gtgggcgacgacgatcagagcatctatgcgttccgcggtgcgcgcgtcggcaacatggcc
gacttcgtgcgcgagttcgcggtgtcgcaccagatcaagctggagcagaactaccgcagc
tacagcaacatcctcgactccgccaacgcgctcatcagccacaacaccaagcggctcggc
aagaacctgcgcaccgaccagggccccggcgagccggtgcgcgtctacgaatcgaccagt
gatttcgccgaggcgcaatggatggtcgaggagatgcgccaactggtgcgcgaaggattc
gaccgcaaggaaatggcggtgctctatcgcagcaacgcgcagagccgggtcatcgaaacg
gcgttgttcaacgcctcggtgccgtaccgcgtgtacggcggactgcgctttttcgagcgg
gccgaaatcaagcacgcgctggcctatctgcggctgctcgagaacaaggacgacgacacg
agcttcctgcgcatcgtcaactttccgccgcgcggcatcggtgcgcgcaccatcgagcag
ttgcaggacgccgcgcgcgcctacgacaacggaaaaggccgctcgctgcacgatgcggtg
catgccgtgccgggcaaggcgggtgccaatctcaccggcttcgtcgcgaagatcgacgtg
ctgcgcgagcagacgcagaacatctcgctgcgggaaatcatcgaactgatcctcgaccac
agcgggctcatcgagcactacaaggccgaccgtgaaggcgccgaccgcatcgagaatctg
gaagaactggtcaacgcggcggagagcttcgtcacgcaggaaggcttcggccgcgatgcg
gtggcgttgcccatcgacgagttgcgccagtcgccggcgagccaggggctgaacccgaac
ctgccggtgctcgacgaagcgatggaactcgcgcccgatgccgagaccggcgaaacgctg
agtccgctcgccgcgttcctgacgcacgctgcgctggagtcgggcgacaatcaggcgcaa
gccggccaagacgccgttcaattgatgacggtgcatgccgccaagggcctcgagttcgac
tgcgtcttcatcaccggcatggaagagggcctctttccgcacgagaacgcgatgagcgac
cacgagagcctcgaggaagagcggcgcctcatgtacgtggcgatcacgcgtgcgcgcaag
cggctgtacatgagccattcgcagacccgcatgctgcacggccagacgcgctacaacgtg
aagagccgcttctacgaagagctgcccgaaggcgcgctcaagtggctgacgccgaagaac
cagggcttcgcgccctcggccttcggttatggcggtggctacgcgacgtcgcgcccgggt
ggcggcgcttcatcgtcgtatgccaaagacacctttgccagcccgccggtgcctccgcaa
aagacggcgccttcgcacggcttgcggtcgggcatgcaggtgttccataacaagttcggg
gaaggcacggtactcggcctcgaaggcaccggcgacgacgcccgggcccaggtgaagttc
gtgcggcacggcgtgaagtggctggcgctctcggtggccaaactcacgccggtctga
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