Variovorax sp. PAMC 28711: AX767_17985
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Entry
AX767_17985 CDS
T04325
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vaa
Variovorax sp. PAMC 28711
Pathway
vaa03030
DNA replication
vaa03430
Mismatch repair
vaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AX767_17985 (dnaE)
03430 Mismatch repair
AX767_17985 (dnaE)
03440 Homologous recombination
AX767_17985 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaa03032
]
AX767_17985 (dnaE)
03400 DNA repair and recombination proteins [BR:
vaa03400
]
AX767_17985 (dnaE)
Enzymes [BR:
vaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AX767_17985 (dnaE)
DNA replication proteins [BR:
vaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AX767_17985 (dnaE)
DNA repair and recombination proteins [BR:
vaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AX767_17985 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AMM26866
UniProt:
A0A126ZIT4
LinkDB
All DBs
Position
3733329..3736841
Genome browser
AA seq
1170 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVVKAAAKDKQPALAITDLNNLFGAVKFYKEARSKGVKP
VLGCEVFVDGLGKEPGALTRIVLLVQNNEGYLHISELLARAWTQNTGRGQTNACVKREWL
EELQGGLICLSGAQAGPLGGPLLQGNAQRATELALQLASLFPHRFYIELQRAGRPEDEPH
VIAAVQLAARLKLPVVATHPVQFPVAEDFEAHEARVCISEGEILGNPRRVRKFTADQYFK
SQAEMEALFADVPSAIANTIEIAKRCNLTLVLGKPQLPNFPTPMVDGVHMPIDEFFRVES
FEGLEQRLAHLYPDATKRDAERPRYVERLKFEINTILGMGFPGYFLIVGDFIKWAKNNGC
PVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQGNRDRVID
YVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGQPVTIQYP
PNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPGK
LTDFTPLYQQPGSDSAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAKDFIVARHKGQEK
FAYEDIKLDDAATYRLFADGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGPM
DLIPSFVARKHGREPVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRR
AMGKKKLEEMAEHRAIFRKGAAVNGIVQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYH
TGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNRGGYRFAPVTDK
SIRYGLGAVKGTGQLAVEAIVKARDGGGPFKSLFDFCVRVDRQRINKRTVEALIKAGAFD
AIQQNRASLSASLDRAFDFASATEANAAQVDIFGDSEHGSAAAEPALVDATPWGVKERLT
LEKTAVGFYLSGHLFDEVAHEVRRFCKREIGELMDSREPQIIAGIVSDMRVINGQRGRLA
IFKLDDTSDAIDATADEALINANRNTLKDDELVIVSGRLQPGRGGFEARFQVQQVWDLAT
ARCRFGKFLRVAVNGKAPDIARLVKDFPPRTESSEHGDLVQGLPVRLSMARGGAQVELQL
GERAKFFPTDAALASWTAQAEAGKAAIVYE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcctgcacaccgagttttccgtcgtcgatggcaccaaccgcatc
gatgaagtcgtcaaggccgcggccaaagacaagcagcccgcgctggcgatcaccgacctg
aacaacctgttcggcgccgtcaagttctacaaggaagcgcgcagcaagggcgtcaagccg
gtgctgggctgcgaggtgttcgtggacggtctgggcaaggagccgggtgcgctcacccgc
atcgtgctgctggtgcaaaacaacgagggctacctgcacatttcggagctgctcgcacgc
gcctggacgcaaaacacgggccgcggccagaccaacgcctgcgtcaagcgcgagtggctc
gaagaattgcagggcgggttgatctgcctgtcgggcgcgcaggccgggccgctcggcggc
cccttgttgcagggcaatgcgcagcgggcgaccgaactcgcactgcaactggcgagcctg
ttcccgcatcgcttctacatcgagctgcaacgtgccggtcggcctgaagacgagccgcat
gtgatcgctgccgtgcagctggcagctcggctcaagctgccggtggtggcaacgcatccg
gtgcagtttccggttgctgaagatttcgaggcgcacgaggcccgtgtctgcatctccgag
ggcgaaatcctcggcaacccgcgccgcgttcgcaagttcacggccgaccagtatttcaaa
tcgcaggccgagatggaagcgctgttcgccgatgtgccgagcgccattgccaacacgatc
gaaatcgcgaagcgctgcaatttgacgctggtcctcggcaagccgcaactgccgaacttt
ccgacgccgatggttgacggcgtgcacatgccgatcgacgagttcttccgcgtcgaatcg
tttgagggcctggagcagcgtcttgcacacctctaccccgatgcgacgaagcgcgatgcc
gagcggccacgctacgtcgagcgactcaagttcgagatcaacacgatcctgggcatgggg
ttccccggctactttttgatcgtgggcgacttcatcaaatgggccaagaacaacggctgt
ccggtgggtccgggccggggctcgggtgcggggtcgctggtggcctacgcgctgaagatc
accgacctcgacccgctcgaatacaacttgcttttcgagcgtttcctgaaccccgaacgc
gtgtcgatgcccgacttcgacatcgacttctgtcagggcaatcgcgaccgcgtgatcgac
tacgtcaaggacaagtacgggcgcgatgcggtgagccagatcgcgaccttcggcacgatg
gcggcgcgcgccgccatccgcgacgtgggccgcgtgctcgacatgagctacatgttctgc
gatggcatcagcaagctgatcccgaacaagcccggccagccggtcacgatccagtacccg
cccaacccgaaggtggagggcgacaagaacaactacgccatcgagatggagccgcagctc
gccgcgcgcatcgagaaggaagaagaagtgcgcatgctggtcgagctcgcgcaaaagctc
gaaggcatgacgcgcaacatcggcatgcatgcgggcggcgtgctcatcgcgcccggcaag
ctcaccgacttcacgccgctctaccagcagccgggcagcgattcggccgtgagccagtac
gacaaagacgacgtggaggccgtgggcctggtcaagttcgacttcttgggcctggccacg
ctgacgattctcgagatcgcaaaagacttcatcgtcgcgcgccacaagggccaggaaaag
ttcgcctacgaagacatcaagctcgacgacgcggccacttatcgcctctttgccgacggc
aagaccgaggcggtgttccagttcgaatctcgcggcatgcagggcatgctgaaagacgca
cggcccacccggctcgaagacctgatcgcgctcaacgcgctgtaccgtccgggcccgatg
gacctgatccccagcttcgtggcgcgcaagcacggccgcgagccggtcgagtatccgcat
ccgctggtggccgagatgctcagcgagacctacgggatcatggtctaccaggaacaggtg
atgcagaccgcgcagatcctgggcggctactcgctcggcggcgccgacctgttgcgccgc
gcgatgggcaagaagaagctcgaggaaatggccgagcaccgcgccatcttccgcaagggc
gcggcggtcaacggcatcgtgcaggacaaggccgacgagatcttcgacctgatggagaag
ttcgcgggctacggcttcaacaagtcgcacgccgctgcgtattcgctgctcgcgtatcac
accggctggctcaaggtccattacacggccgagttcttctgcgcgaacatgaccgtggaa
atggacgacaccgacaagctgaaggtgctgttcgaagacgcgcaaaagaacttcggcatc
acgttcgaaccgccggatgtcaacagaggcggctaccgcttcgcgccggtcaccgacaag
tcgatccgttatggcctcggcgccgtcaagggcacaggccagctcgccgtcgaagcgatc
gtcaaggcgcgcgacggaggcggcccgttcaagagcctgttcgatttctgcgtgcgggta
gaccgccagcgcatcaacaagcgcaccgtcgaagcgctcatcaaggcgggcgcgttcgac
gcaatccagcaaaaccgtgcatcgctcagcgcatcgctcgaccgcgcgttcgacttcgcg
agcgcgaccgaggccaatgcggcgcaggtcgacatcttcggcgacagcgagcacggctcg
gccgctgccgaaccggcgctggtcgatgccacgccctggggcgtgaaggagcggctcacg
ctcgaaaaaaccgccgtcggtttctacctctcgggtcatctgttcgacgaggtggcgcac
gaggttcggcgcttctgcaagcgcgagatcggcgagctcatggacagccgcgagccgcag
atcatcgcgggcatcgtgagcgacatgcgcgtcatcaacgggcagcgcgggcgcctcgcg
atcttcaagctcgacgacacctcggacgcgatcgacgccaccgccgacgaagccttgatc
aacgccaaccgcaacacgctgaaagacgacgagctcgtgatcgtcagcggtcgtctgcag
ccggggcgtggcggcttcgaagcgcgcttccaggtgcaacaggtgtgggacctggcgacg
gcccgctgccgattcggcaaattcctgcgcgtggcggtgaacggcaaggcgccggacatc
gcgcggctggtgaaggactttccgccgcgcaccgaatcgagcgagcacggcgaccttgtg
cagggtctgccggtgcgcctgagcatggcccgcggcggcgcgcaggtcgaactgcaattg
ggcgagcgcgcgaagttctttccgaccgacgccgcgctcgcgagctggacagcgcaagcc
gaagcaggcaaggcggccatcgtttacgaatga
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