KEGG   Vulcanimicrobium alpinum: WPS_07450
Entry
WPS_07450         CDS       T09508                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
vab  Vulcanimicrobium alpinum
Pathway
vab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WPS_07450 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vab03019]
    WPS_07450 (rnj)
Messenger RNA biogenesis [BR:vab03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     WPS_07450 (rnj)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: BDE05469
UniProt: A0AAN1XUZ5
LinkDB
Position
737316..739010
AA seq 564 aa
MTSDTFVVPAPPSEPYLRIVPLGGCGEIGRNMTVVETNDDLVVVDCGLMFPDEEMFGVDI
VINDFTYLRERRDKFRGLLVTHGHEDHIGGIPYLLREFPQIPVVGTPLSLALIRAKLKEH
KPGEWQAREVEPGDRVKWGAIEAQFIHINHSLAGACALAIRTPLGTVFHTGDFKFDQTPI
DGDPADFASIARVGDEGVLVMLSDSTNAERPGHTLSERIVGEAFSNIFARAKGRIIVTSF
ASNVPRIQQVVDQSRRFGRKVAFLGRSLQNVVQFAGQLGYLDIPDGLVIRLEDVDDHPPE
QICVMTTGSQGEPMSALTRLSVRDHKKFKIVPGDTVVISATPIPGNEKSVAKTINNLYRI
GANVIHGSSGNAHVSGHASQEELLLMLNLVRPKYFVPIHGEYRMLVTHGRLAAQTGVAGD
NVFVAENGDVLQFTKEGAEKVGRTYGGNVMVDGSGVGDVGEAVLRDRKHLAGDGIMMVVV
TVDAEEARVVAGPDLISRGVFYLPESGELVDELKERLSRILADCSVEGIRDIGNVKEHIR
SGLAKMVFEKSRRRPIVIPVVMEV
NT seq 1695 nt   +upstreamnt  +downstreamnt
ttgacttccgatacctttgtcgtccctgctccgcccagcgagccgtatcttcgcatcgtc
ccgctcgggggctgcggcgagatcggccgcaacatgacggtcgtcgagaccaacgacgat
ctggtcgtcgtcgactgcgggctgatgttccccgacgaggagatgttcggggtcgacatc
gtcatcaacgacttcacctacctgcgcgagcgccgcgacaagttccgcggcctgctggtc
acgcacgggcacgaagatcacatcggcgggattccctacctgctgcgcgagtttccgcag
atcccggtggtcggcaccccgctctcgctcgcgctgatccgcgcgaagctcaaagaacac
aagcccggcgagtggcaggcccgcgaagtcgaacccggcgatcgcgtgaagtggggcgcg
atcgaagcgcagttcatccacatcaaccactcgctggcgggcgcgtgcgcgctggcgatc
cgcacgccgctgggcacggtcttccacaccggcgacttcaagttcgatcagacgccgatc
gacggcgaccccgccgacttcgcgtcgatcgcgcgcgtgggcgacgagggcgtgctggtg
atgctttctgattcgaccaacgcggagcgtccgggccacacgctctcggaacggatcgtc
ggcgaagcgttctcgaacatcttcgcgcgggcgaagggccgcatcatcgtgacgtccttc
gcgtcgaacgtcccgcgcatccagcaggtcgtcgatcagtcgcggcgcttcgggcgaaag
gtcgcgtttctcgggcgttcgctccagaacgtggtgcaattcgccggccagctcggctat
ctcgacatccccgacggtctggtgatccggctcgaagatgtcgacgatcatccgcccgag
cagatctgcgtgatgacaaccggttcgcagggcgagccgatgtcggcgctgacccggctc
tcggtgcgcgaccacaagaagttcaagatcgtccccggcgacacggtcgtgatctcggcg
acgccgatccccggcaacgagaaatcggtcgcgaagacgatcaacaacctctaccgcatc
ggggcgaacgtcatccacggatcgagcggcaacgcgcacgtctcgggacacgcatcgcaa
gaagagctgctgctgatgctcaacctggtgcggccgaagtacttcgtcccgatccacggc
gagtatcggatgctggtgacgcacggacggctcgccgcgcagaccggcgtcgccggcgac
aacgtcttcgtcgcggagaacggcgacgtgctgcaatttaccaaagagggcgcggagaaa
gtcggccgcacgtacggcggcaacgtgatggtcgacggttccggggtcggcgacgtcggc
gaagcggtgctgcgcgatcgcaagcatctcgccggcgacgggatcatgatggtggtggtg
acggtcgatgcggaagaagcgcgcgtcgtcgccggtcccgatttgatctcacgcggcgtg
ttctacttgcccgagtccggtgaactcgtcgacgagttgaaagaacggctgtcgcgcatc
ctggccgactgcagcgtcgaggggatccgcgacatcggcaacgtcaaggaacacatccgc
tcggggctcgccaagatggtgttcgaaaaatcgcgccgccggccgatcgtgatcccggtg
gtgatggaagtctga

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