Vulcanimicrobium alpinum: WPS_07450
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Entry
WPS_07450 CDS
T09508
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vab
Vulcanimicrobium alpinum
Pathway
vab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WPS_07450 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vab03019
]
WPS_07450 (rnj)
Messenger RNA biogenesis [BR:
vab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WPS_07450 (rnj)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BDE05469
UniProt:
A0AAN1XUZ5
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Position
737316..739010
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AA seq
564 aa
AA seq
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MTSDTFVVPAPPSEPYLRIVPLGGCGEIGRNMTVVETNDDLVVVDCGLMFPDEEMFGVDI
VINDFTYLRERRDKFRGLLVTHGHEDHIGGIPYLLREFPQIPVVGTPLSLALIRAKLKEH
KPGEWQAREVEPGDRVKWGAIEAQFIHINHSLAGACALAIRTPLGTVFHTGDFKFDQTPI
DGDPADFASIARVGDEGVLVMLSDSTNAERPGHTLSERIVGEAFSNIFARAKGRIIVTSF
ASNVPRIQQVVDQSRRFGRKVAFLGRSLQNVVQFAGQLGYLDIPDGLVIRLEDVDDHPPE
QICVMTTGSQGEPMSALTRLSVRDHKKFKIVPGDTVVISATPIPGNEKSVAKTINNLYRI
GANVIHGSSGNAHVSGHASQEELLLMLNLVRPKYFVPIHGEYRMLVTHGRLAAQTGVAGD
NVFVAENGDVLQFTKEGAEKVGRTYGGNVMVDGSGVGDVGEAVLRDRKHLAGDGIMMVVV
TVDAEEARVVAGPDLISRGVFYLPESGELVDELKERLSRILADCSVEGIRDIGNVKEHIR
SGLAKMVFEKSRRRPIVIPVVMEV
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
ttgacttccgatacctttgtcgtccctgctccgcccagcgagccgtatcttcgcatcgtc
ccgctcgggggctgcggcgagatcggccgcaacatgacggtcgtcgagaccaacgacgat
ctggtcgtcgtcgactgcgggctgatgttccccgacgaggagatgttcggggtcgacatc
gtcatcaacgacttcacctacctgcgcgagcgccgcgacaagttccgcggcctgctggtc
acgcacgggcacgaagatcacatcggcgggattccctacctgctgcgcgagtttccgcag
atcccggtggtcggcaccccgctctcgctcgcgctgatccgcgcgaagctcaaagaacac
aagcccggcgagtggcaggcccgcgaagtcgaacccggcgatcgcgtgaagtggggcgcg
atcgaagcgcagttcatccacatcaaccactcgctggcgggcgcgtgcgcgctggcgatc
cgcacgccgctgggcacggtcttccacaccggcgacttcaagttcgatcagacgccgatc
gacggcgaccccgccgacttcgcgtcgatcgcgcgcgtgggcgacgagggcgtgctggtg
atgctttctgattcgaccaacgcggagcgtccgggccacacgctctcggaacggatcgtc
ggcgaagcgttctcgaacatcttcgcgcgggcgaagggccgcatcatcgtgacgtccttc
gcgtcgaacgtcccgcgcatccagcaggtcgtcgatcagtcgcggcgcttcgggcgaaag
gtcgcgtttctcgggcgttcgctccagaacgtggtgcaattcgccggccagctcggctat
ctcgacatccccgacggtctggtgatccggctcgaagatgtcgacgatcatccgcccgag
cagatctgcgtgatgacaaccggttcgcagggcgagccgatgtcggcgctgacccggctc
tcggtgcgcgaccacaagaagttcaagatcgtccccggcgacacggtcgtgatctcggcg
acgccgatccccggcaacgagaaatcggtcgcgaagacgatcaacaacctctaccgcatc
ggggcgaacgtcatccacggatcgagcggcaacgcgcacgtctcgggacacgcatcgcaa
gaagagctgctgctgatgctcaacctggtgcggccgaagtacttcgtcccgatccacggc
gagtatcggatgctggtgacgcacggacggctcgccgcgcagaccggcgtcgccggcgac
aacgtcttcgtcgcggagaacggcgacgtgctgcaatttaccaaagagggcgcggagaaa
gtcggccgcacgtacggcggcaacgtgatggtcgacggttccggggtcggcgacgtcggc
gaagcggtgctgcgcgatcgcaagcatctcgccggcgacgggatcatgatggtggtggtg
acggtcgatgcggaagaagcgcgcgtcgtcgccggtcccgatttgatctcacgcggcgtg
ttctacttgcccgagtccggtgaactcgtcgacgagttgaaagaacggctgtcgcgcatc
ctggccgactgcagcgtcgaggggatccgcgacatcggcaacgtcaaggaacacatccgc
tcggggctcgccaagatggtgttcgaaaaatcgcgccgccggccgatcgtgatcccggtg
gtgatggaagtctga
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