Vulcanimicrobium alpinum: WPS_21100
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Entry
WPS_21100 CDS
T09508
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vab
Vulcanimicrobium alpinum
Pathway
vab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WPS_21100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vab03021
]
WPS_21100
03400 DNA repair and recombination proteins [BR:
vab03400
]
WPS_21100
Enzymes [BR:
vab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WPS_21100
Transcription machinery [BR:
vab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WPS_21100
DNA repair and recombination proteins [BR:
vab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WPS_21100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
BDE06834
UniProt:
A0AAN1XXN3
LinkDB
All DBs
Position
complement(2060504..2064301)
Genome browser
AA seq
1265 aa
AA seq
DB search
MNLLDVNNFDAMRIGLASPEQIRAWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTKDW
ECHCGKYKRIRFKGMICDRCGVEITRAKVRRERMGHIELATPVTHIWYFKGVPSRIGILL
DMSPRQLEKVIYFAAYVVTDPGTTTLTKREILTEQKYRESREKYGTNFKAGMGAEAIREL
LRDLNLRKLQDDLRREFKETSGQKRIKAIKRLEVVEAFLASGNKPEWMILSAVPVIAPEL
RPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPEIIIKNEKRMLQEAVDALIDN
GRRGRPVTGPNNRPLKSLSDILKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLP
KEMALELFKPFVMKKLVDRGQAHNIKSAKRMVERVRPEVWDVLDEVIREHPVLLNRAPTL
HRLGIQAFEPVLVEGKAIHLHPLVCTPYNADFDGDQMAVHLPLSAGAQAEARILMLSSNN
ILQPSFGVPVSIPTQDMVLGLYWLTFQPDDYKGPAKAALSDDALYAMPVARNGKARKHPD
GTTALLAFKDAEEAITAFNHQLIGLHEWIEIRYEGKRIRTTVGRAILNEAFPPEWEYPFL
NHILDKSALKKLITECYRKFGNAATAEFLDAIKALGFRYATQSGTTVSISDIIVPQAKHE
LLDKAQGDVDELHGLFDQGFISDDERYNKTIEIWQKAGDDVTVAMQQAQNPLNPVFMMAT
SGARGSIAQVKQLGGMRGLMSDPSGRILEIPVKASLKEGLTVLEYFISTHGARKGLADTA
LRTADSGYLTRRLVDVAQDVIIREEDCGTANGITVNDIRVGKETIEPIYDRIIGRRAAED
IKDPEKPRGEKLVKRNDEIDEEKAKAIIAAGIQTVKIRSVLACQAKYGVCAMCYGRNLAT
GLKVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVAQEDIITGLPRVEEIFEARKPKGEA
PVVEFAGTIKFGEEKGKRVVFVTDADGVDHEVDVPANTHLSVQEGQQVVAGQPVAEGSLN
PHDILRISGETALQNYLVQEVQKVYRSQGVDINDKHIEVIVRSMLRKIKIVDGGDTRMLP
GQLIEAAVFAEENEKIKAEGGKIAEGTPVLLGVTKASLATESFLSAASFQETTRVLTDAA
IKGKHDPLLGLKENVIIGKLIPAGTGMSRYRNLTIQPEGQDLDEEGRAKNVFLDFNPDPD
GLSSYADVVAPNGQEMNPKVLGPYERQRMAENTVQYEGDYEPDATVSAPGVRTQYKPKGI
NPEDL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcctcgacgtcaacaatttcgacgcgatgcgtatcgggctcgccagccccgaa
cagattcgcgcctggtccttcggcgaagtgaagaagccggagacgatcaactaccgcacc
ctcaagccggaacgcgacgggctcttctgcgagaagatcttcggtccgaccaaagactgg
gaatgccactgcggtaagtacaagcgcatccgcttcaaagggatgatctgcgaccgttgc
ggcgtcgagatcacgcgcgcgaaagtgcgccgcgagcggatgggccacatcgagctcgcc
acgcccgtcacgcacatttggtatttcaagggtgtgccgtcgcgcatcggcatcctgctc
gacatgtcgcctcgtcagctcgagaaggtgatctatttcgccgcgtacgtggtgaccgat
cccggcacgacgacgctcaccaagcgcgagatcctcaccgagcagaagtaccgcgagagc
cgcgagaagtacggaacgaatttcaaggccggcatgggcgcggaagcgatccgcgagctg
ctgcgcgacttgaacttgcggaaactgcaagacgatctgcgccgcgaattcaaagagacg
tcgggacagaagcgcatcaaggcgatcaagcgcctcgaagtcgtcgaagcgttcctcgcg
tcgggcaacaagccggagtggatgatcctctccgcagtgccggtgatcgcgcccgaactg
cgcccgatggtccagctcgacggcggccgcttcgccacgtccgatctcaacgatctctat
cgccgtgtgatcaaccgcaacaaccgcctcaagcggctgctggaactctccgcgcctgag
atcatcatcaaaaacgagaagcgcatgctgcaggaagcagtcgacgcgctcatcgacaac
ggccgccgcgggcgcccggtcaccgggcccaacaaccgtccgttgaagtcgctctccgac
atcctcaagggcaaacagggccgcttccgtcagaacctgctcggcaagcgcgtcgactac
tcgggccgttcggtcatcgtggtcggcccgaacctcaagctgcaccagtgcgggctgccc
aaagagatggcgctcgagctcttcaagccgttcgtgatgaagaagctggtcgatcgcggc
caagcgcacaacatcaagagcgctaagcgcatggtggaacgcgtgcgtccggaagtgtgg
gacgtgctcgacgaagtgattcgcgagcatccggtgctgctcaaccgcgcgccgacgctg
caccgtttgggtattcaggcgttcgagccggtgttggtggagggcaaggccatccatctg
catccgctggtctgcacgccgtacaacgccgacttcgacggcgaccagatggccgtgcat
ctcccgctgagcgccggcgcgcaggcggaagcgcgcatcctgatgctctcgtcgaacaac
atcctgcagccgtcgttcggcgtgccggtgtcgatcccgacccaggacatggtgctcggg
ctctactggctcacgtttcagcccgacgactacaagggtccggcgaaggccgcgctctcc
gacgacgcgctttacgcgatgcctgtcgcgcgcaacggcaaggcccgcaagcatcccgac
ggcaccacggcgctgctcgcgttcaaggacgctgaggaagcgatcaccgcgttcaaccac
caactgatcgggctgcacgagtggatcgagatccgctacgaaggcaagcgcatccgcacc
accgtcggccgcgcgatcctcaacgaagcgttcccgccggagtgggagtacccgttcctc
aaccacatcctcgacaagagcgcgctcaagaagctgatcaccgagtgctatcgcaagttc
ggcaacgcagcaacggccgagttcctcgacgcgatcaaggcactgggcttccgctacgcg
acgcagtcggggacgacggtgtcgatcagcgacatcatcgtgccgcaggccaagcacgaa
ctgctcgacaaggcccagggcgacgtcgacgagctgcacggcttgttcgaccagggcttc
atctcggatgacgagcgctacaacaagacgatcgagatctggcagaaggccggtgacgat
gtcaccgtcgcgatgcagcaggcgcagaacccgctcaacccggtgttcatgatggcgacc
tccggcgcgcgcggttcgatcgcgcaggtcaagcagctcggcggtatgcgcggactcatg
tccgacccgtcgggccgcatcctggagatcccggtcaaggcgtcgctcaaagaaggcctc
acggtcctcgagtacttcatctcgacgcacggcgcgcgcaagggtctcgccgacaccgcg
ctgcgcacggccgactcgggctacttgacgcgtcgtctggtcgacgtggcgcaggacgtc
atcatccgcgaagaagattgcggaacggcgaacggcatcactgtcaacgacatccgcgtc
ggcaaagagacgatcgagccgatctatgatcggatcatcggccgccgcgccgccgaggac
atcaaagatccggagaaaccgcgcggcgagaagctcgtaaagcggaacgacgagatcgat
gaggagaaggccaaggcgatcatcgccgcggggattcagacggtcaagattcgctcggtg
ctcgcgtgccaggcgaagtacggcgtctgcgcgatgtgctacggccgcaatctcgccacc
ggcctcaaggtcgacatcggcgaagcggtcgggatcatcgcggcgcagtcgatcggtgaa
ccggggacgcagctcacgctgcgcaccttccacaccggcggcgtcgcccaggaagacatc
atcaccggtctcccgcgcgtcgaggaaatcttcgaagcgcgcaagccgaagggcgaggcg
ccggtggtggagttcgccggcacgatcaagttcggcgaggagaagggcaagcgcgtcgtg
ttcgtcacggacgccgacggcgtggaccacgaagtcgacgtgccggccaacacgcacctc
tcggtgcaggaaggccagcaggtcgtcgccggtcagccggtggcggaaggctcgctcaac
ccgcacgacatcttgcgaatcagcggcgagaccgcgctgcagaactacctcgtgcaggaa
gtgcaaaaggtctaccgctcacagggcgtcgacatcaacgacaagcacatcgaagtgatc
gttcgctcgatgctgcgcaagatcaagatcgtcgacggcggcgacacgcggatgctcccc
ggtcagctgatcgaagccgcggtcttcgcggaagagaacgagaagatcaaggccgagggc
ggcaagatcgcggagggcaccccggtgctgctcggcgtgacgaaggcgtcgcttgcgacg
gagtcgttcctctcggcggcgtcgttccaggagaccacgcgtgttctcacggacgccgcg
atcaagggcaaacacgacccgctgctcggtctcaaggaaaacgtcatcatcgggaagctc
atcccggccggcacggggatgtcgcgctaccggaatctcacgatccagcccgagggccag
gatctggacgaagaaggccgcgcgaagaacgtgttcctggacttcaacccggatccggat
gggcttagctcatacgctgacgtggtggcgccgaacggccaggagatgaacccgaaggtg
ctgggaccgtacgaacggcagcggatggcggagaatacggtgcagtatgagggcgactac
gaaccggatgcgacggtgagtgcgcctggagtgcggacgcagtacaagccgaaggggatc
aatccggaggatttgtag
DBGET
integrated database retrieval system
