Vulcanimicrobium alpinum: WPS_21400
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Entry
WPS_21400 CDS
T09508
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vab
Vulcanimicrobium alpinum
Pathway
vab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WPS_21400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vab03021
]
WPS_21400 (rpoB)
03400 DNA repair and recombination proteins [BR:
vab03400
]
WPS_21400 (rpoB)
Enzymes [BR:
vab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WPS_21400 (rpoB)
Transcription machinery [BR:
vab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WPS_21400 (rpoB)
DNA repair and recombination proteins [BR:
vab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WPS_21400 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BDE06864
UniProt:
A0AAN1XXQ3
LinkDB
All DBs
Position
complement(2093343..2097251)
Genome browser
AA seq
1302 aa
AA seq
DB search
MATKTTADKPKTTTRSRKKTEAAPPAPATGTAVKQENIASASFHVPEEAFTVELPEDPGP
KRQRHSFAKIKDVLQLPDLIELQKASFKWFISDGLKEAFESISPIKDFTGNLVLEFGEHS
LGEPKYSVEECRERDMTYSAPLRVRVRLITAESGEIKGIPDQEIFMGDFPLMTDKGTFMI
NGAERVIVSQLVRSPGVYFLQDVDTNNRPTFNATIIPNRGAWIEFETDNGTKNDETEGTI
GVRIDKNRKIYATTFVRALSRPDLGHNWENDEAILALFDNSPLIANCLEKDKDIKTKEDA
LKEIYKKLRPGEPENAENAEKLLESLFFDEKRYDLAGVGRYKLSGKLEKEYPAAGLRIPP
IDKKALTREDMIAVLRRLIKVQGKVVHKDDIDHLGNRRIRSVGELLQNQFRVGLLRLERV
VRERMTVQDIETVTPQALINIRPVVAAIKEFFGSSQLSQFMDQTNSLAELTHKRRLSALG
PGGLSRERAGFEVRDVHHSHYGRICPIETPEGPNIGLIGSLATFARVNRYGFIETPYRVV
KDGIVTDDIRYFTADREDDYIVAQANTEMDDRGKIIASSVVARYAEEYVEEPPERVQLMD
VSPKQIVSVATALIPFLEHDDANRALMGANMQRQAVPLLRPQAPIVGTGMEYRAAKDSGG
CVLARADGEIVAADAHAIVVKHDEDGLEHSYDLLKFTRSNAGTCINQRPIVAVGDKVVRG
QILADGPSSDVGELALGQNVLVAFMPWEGYNYEDAILISERMVKDDRFTSIHIEEYECEA
RDTKLGPEEITRDIPNVGEDSLKDLDENGIVRIGAEVRPEDILVGKVTPKGETELTAEER
LLRAIFGEKSREVRDTSLKVPHGEKGKIIDVKRFSRENGDELSPGVNHLVRVYVAQKRKI
LQGDKMAGRHGNKGVIAKVLPEEDMPYLEDGTPVDIVLNPLGVPSRMNLGQIMETHLGWA
ARMLDMHIATPVFDGAHSEDIAEWLMDAGLPADGKTWLRDGRSGERFGRPITVGMIYMLK
LAHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVK
SDDVVGRVKTYEAIVKGENVLEPGVPESFKVLIKELQSLALDVKVLTEQREEVEIRIQDD
DMAERAQEIGLLMGDEDPRLSQTALAEREAERERISQAAAAAVGVPVEGEEGEAAGAIVE
EEPEEEEEEIDDSAPLVSAAPARGGRAPDDDILPTSPLGGLRATMTDDGEIVVDEVTDEE
IPAVAEEEDVDEGYTLEEEDEEYKEEEEEDEGPLAHSTDDDY
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaagacgacggcggataaacccaagacgacgacgcgcagccgcaagaagacc
gaagcggcacccccagcgccggcgaccgggaccgcggtcaagcaagagaacatcgcgagc
gcgagcttccacgtccccgaggaagcgttcaccgtcgaactgccggaggatcccggcccg
aagcggcagcgccattcgttcgcgaagatcaaagacgtactgcagcttcccgacctgatc
gagctgcagaaagcctcctttaagtggttcatcagcgacgggttgaaggaagcgttcgag
tcgatctcgccgatcaaggatttcaccggcaacctcgtgctggagttcggtgaacacagc
ctgggcgagccgaagtactccgtcgaggaatgccgcgagcgcgacatgacgtactcggcg
ccgctgcgcgtccgcgtccgcctgatcaccgcggagtcgggtgagatcaagggtatcccc
gaccaggaaatcttcatgggcgatttcccgctcatgaccgacaagggcacgttcatgatc
aacggcgcggagcgcgtgatcgtgagccagctcgtccgctcgccgggcgtctatttcttg
caggacgtcgacaccaacaaccgtccgacgttcaacgcgacgatcatcccgaatcgcggc
gcgtggatcgagttcgagaccgacaacggcacgaagaacgacgagaccgaaggcacgatc
ggcgtccgcatcgacaagaatcgcaagatctacgcgacgaccttcgtgcgcgcgctctcg
cgtcccgatctcggccataactgggaaaacgacgaagcgatcctggcgctcttcgacaac
agcccgctgatcgcgaactgtctcgaaaaagacaaggacatcaagaccaaggaagacgcg
ctcaaggagatctacaaaaagctccgcccgggcgagcccgaaaacgcggagaacgccgag
aagctcctcgaatctctgttcttcgacgagaagcgctacgatctcgccggcgtcggccgc
tataagctcagcgggaagctcgagaaagagtaccccgccgccggcctgcgcattccgccg
atcgacaagaaggcgctcacgcgcgaggacatgatcgcggtgctgcgtcgcctcatcaag
gtgcagggcaaggtcgttcacaaggacgacatcgaccatctcggcaatcgccgcatccgc
tccgtcggcgagctgctgcagaaccagttccgcgtcggtttgctgcgcctcgaacgcgtc
gtgcgcgagcgcatgacggttcaggacatcgagacggtgacgccgcaggcgctgatcaac
atccgcccggtcgtcgcggcgatcaaagagttcttcggctcctcgcagctctcgcagttc
atggaccagaccaactcgctcgccgagctgacgcacaagcggcgcctctcggcgctcggg
ccgggcggtctctcgcgtgaacgcgcgggcttcgaagtccgcgacgtccaccactcgcac
tacggccgcatctgcccgatcgagacgccggaaggcccgaacatcggtctgatcggttcg
ctcgcgacgttcgcgcgcgtcaaccgctacggcttcatcgagacgccgtaccgcgtcgtg
aaggacgggatcgtcaccgacgacattcgctacttcaccgcggatcgcgaagacgattat
atcgtcgcgcaggcgaacacggagatggacgatcgcggcaagatcatcgcgagttcggtc
gtcgcccgctacgccgaagagtacgtcgaagagccgccggaaagagttcagctcatggac
gtctcgccgaagcagatcgtctcggtcgcgacggcgctgatcccgttcctcgagcacgac
gacgccaaccgcgcgctgatgggcgcgaacatgcagcgtcaggccgtgccgctgctccgt
ccgcaggcgccgatcgtcggcaccgggatggagtaccgcgcggcaaaggactcggggggc
tgcgtgctcgcgcgtgccgacggcgagatcgttgccgccgacgcgcacgcgatcgtcgtc
aagcacgacgaggacggcctcgagcactcctacgacctgctcaagttcacgcgctccaac
gcggggacgtgcatcaaccagcgtccgatcgtcgcggtcggcgacaaggtcgtgcgcggt
cagattctcgccgacggtccgtcctcggacgtgggcgagctcgcgctcggtcagaacgtg
ctcgtcgcgttcatgccgtgggaaggctacaactacgaagacgcgatcctgatctccgag
cggatggtcaaggacgaccgcttcacctcgatccacatcgaggagtacgagtgcgaagcc
cgcgacacgaagctcgggcccgaagagatcacgcgcgacatccccaacgtcggcgaagac
tcgctcaaggatctcgacgagaacggcatcgtccgcatcggcgcggaagtccgtccggaa
gacatcctggtcgggaaagtcacgcctaagggcgagaccgagctgacggcggaagagcgc
ctgctgcgcgcgattttcggtgagaagtcacgcgaagtgcgcgatacctcgctcaaagtg
ccgcacggtgagaagggcaagatcatcgacgtcaagcgcttctcgcgcgagaacggcgac
gaactctcgcccggcgtcaaccacctcgtccgcgtctacgtcgcgcagaagcgcaagatt
ctgcagggcgacaaaatggctggccggcacggcaacaagggcgtcatcgccaaggtgctg
ccggaagaggacatgccgtacctcgaggacggcacgccggtcgacatcgtgctcaatccg
ctgggcgtgccgtcgcgcatgaacctcgggcagatcatggagacgcacctcggctgggcg
gcgcgcatgctcgacatgcacatcgcgacgccggtgttcgacggtgcgcattcggaagac
atcgcggaatggctgatggacgcgggactccctgcggacggcaagacctggctgcgtgac
ggccgttcgggcgaacgtttcggacgcccgatcaccgtcggcatgatctacatgctcaag
ctcgcgcatctcgtcgacgacaagatccacgcgcgctcgaccggcccctactcgatgatc
acgcagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaa
gtctgggcgctcgaagcgtacggcgctgcgtacaccctgcaagaactcctcacggtcaag
tccgacgacgtcgtgggtcgcgtgaagacgtacgaagcgatcgtcaagggcgagaacgtg
ctcgagccgggcgtcccggaatcgttcaaggtcctgatcaaggaactccagtcgctcgcg
ctcgacgtcaaggtgttgacggagcagcgcgaagaggtcgaaatccgcatccaggacgac
gacatggcggagcgtgcccaagagatcgggctgctgatgggcgacgaagatccgcgcctt
tcgcagaccgcgctcgcggaacgcgaagccgaacgcgaacggatctcgcaagccgcggcc
gccgcggtcggcgttccggtcgagggtgaagagggcgaagccgccggcgcgatcgtcgag
gaagagcccgaagaggaagaagaggagatcgacgattcggctccgctcgtcagcgccgct
ccggcgcgcggcggacgtgcgcccgacgacgacatcctcccgacgagcccgctcggcggt
ctgcgcgcgacgatgacggacgacggcgagatcgtcgtcgacgaagtcaccgacgaagag
atcccggccgtcgccgaagaggaagacgtcgacgagggctacacgctcgaagaagaagac
gaagaatacaaggaagaggaagaagaggacgaaggccccctggcccactccaccgacgac
gactactga
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integrated database retrieval system
