Vulcanimicrobium alpinum: WPS_33700
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Entry
WPS_33700 CDS
T09508
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vab
Vulcanimicrobium alpinum
Pathway
vab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WPS_33700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vab03400
]
WPS_33700
Enzymes [BR:
vab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WPS_33700
DNA repair and recombination proteins [BR:
vab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WPS_33700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BDE08094
LinkDB
All DBs
Position
complement(3315456..3317156)
Genome browser
AA seq
566 aa
AA seq
DB search
MNRKSSGAKPPGRKKAAKAAEPLAEYARKRDFAATPEPKGRKRSASKQLRFVVQEHRATR
LHWDFRLEAGGVMPSWAVAKGPTLVPLEKRLAMKTEDHPLDYQTFEGVIPEGNYGAGEVI
VWDNGTYALAEGDDPIAEIAKGKLKFVLNGTKLKGLFSLVKIKPREGEHGEPWLLFKDHD
AYEDPAWKVEEHAESVKSGKTLAELQASRKDAPIWRSNRAAAPDGTAVKRAARAKSAHAD
PIPRDATPMLATPVDAPFDDDDWLFELKWDGYRAIATIERDGVTLRSRTGKDLLHQFGEM
RELVHAFRSVPIVVDGELCVLDANGKPDFQALQSRDKPVPGMKRHKPSPVTFVVFDCLYA
DGRDLRTRPLEERKRLLEQLIVPDHVVMYSKHVIGHGKELFALAERGGLEGIVGKQRSSP
YRSTRSREWVKVKAKKRQEFVIGGYTEPRGSRKGFGALLVGYYDGDDLLYAGHVGTGYNE
DSLKALTAKLEPLERKTSPFSNTPPKTNTPAHWVAPKLVAEVTFAEWTREGILRQPVYLG
LRIDKDAKSVVREVEQHITPATRRAR
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcgaaagagctctggcgcgaagccaccgggaaggaaaaaggccgctaaggcggcc
gagccgctcgcggagtatgcgcgcaagcgcgacttcgcggcgaccccggaaccgaaagga
cgcaagcggagcgcttccaagcagctccgcttcgtcgtgcaggagcatcgcgcgacccgc
ctgcactgggatttccggctcgaagccggcggcgtgatgccgtcgtgggccgtcgcgaag
ggacccacgctggtgccgctcgagaaacggctcgcgatgaagaccgaggatcacccgctc
gactatcagacgttcgagggcgtgatccccgagggcaattatggcgcgggcgaggtgatc
gtgtgggacaacggtacctacgcgctcgccgaaggcgacgatccgatcgccgagatcgcc
aaagggaagctcaagttcgtgctcaacggcacgaaactcaaagggctcttctcgctggtg
aagatcaagccgcgcgagggcgagcacggcgaaccgtggctgctcttcaaggatcacgac
gcgtacgaagatccggcgtggaaggtcgaagagcacgccgagagcgtgaagagcggcaag
acgctggcggaactgcaggcgtcgcgcaaggacgcgccgatctggcgcagcaaccgcgcc
gccgcgcccgacggcaccgcggtcaagcgcgccgcgcgcgcgaagtccgcgcacgcggat
ccgatcccgcgcgacgcgacgccgatgctggcgacgccggtcgacgcgccgttcgacgac
gacgactggctcttcgaactcaagtgggacggctaccgcgcgatcgcgacgatcgaacgc
gacggcgtgaccctgcgttcgcgcaccgggaaagatctgctgcaccagttcggcgagatg
cgcgagctggtgcacgcgtttcgttccgtgccgatcgtcgtcgacggcgaactgtgtgtg
ctcgacgcgaacgggaagccggattttcaagccctgcagtcgcgcgacaagcccgtcccg
ggaatgaagcgtcacaagccatctcccgtgacgttcgtcgtcttcgattgcctctacgcc
gacggccgcgacttgcgcacgcggccgctcgaagagcggaaacgcctgctcgagcagctg
atcgttccggatcacgtcgtgatgtattcgaagcacgtgatcgggcacggcaaggagctt
ttcgcgctcgccgagcgcggcggactcgaagggatcgtcgggaagcagcgcagttcgccg
taccgctcgacccggtcgcgcgagtgggtgaaggtcaaagccaagaagcgccaggagttc
gtgatcggcggctacaccgaaccgcgcggttcgcgcaagggcttcggcgcgctgctcgtc
gggtattacgacggcgacgacctgctctacgccggtcacgtcgggaccggatacaatgaa
gattcgctcaaggcgctcaccgcgaagctcgagccgctggaacgcaagacgtcgcccttc
tccaacacgccgccgaagacgaacacgccggcgcactgggtcgcgccgaagctcgtcgcg
gaggtgacgttcgcggagtggacgcgcgaagggatcctccggcagccggtctatctcggg
ctgcgcatcgataaagatgcgaagagcgttgtgcgcgaggtcgaacagcacatcacgcct
gcaacgcggcgcgcgcgatga
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