Vagococcus xieshaowenii: E4Z98_03925
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Entry
E4Z98_03925 CDS
T05932
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vac
Vagococcus xieshaowenii
Pathway
vac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4Z98_03925 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vac03019
]
E4Z98_03925 (rnr)
03016 Transfer RNA biogenesis [BR:
vac03016
]
E4Z98_03925 (rnr)
Enzymes [BR:
vac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E4Z98_03925 (rnr)
Messenger RNA biogenesis [BR:
vac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4Z98_03925 (rnr)
Transfer RNA biogenesis [BR:
vac03016
]
Prokaryotic type
tRNA degradation factors
E4Z98_03925 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
S1_RRP5
GH97_N
Motif
Other DBs
NCBI-ProteinID:
QCA28503
UniProt:
A0AAJ5EGC3
LinkDB
All DBs
Position
807037..809391
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AA seq
784 aa
AA seq
DB search
MKKTIRESIISFMETSDKASFSIQEIAAGLELEQSQNFKLLVQTIASMERDKEVEFTSKG
KIKLPMELTIEGTFRANDRGFGFVTISPEEPDVYIAKEMTNFALNGDTVKLDIIKPGNPI
DNQAAEGRIVEVIARAMTQLVGEFVAYDEDLINETGLYGYISPKSKLMSHYKVYIAAEGI
HPEDGEICVVEITHYPEKGYEDQIEGIVKQTIGHKNEPGMDILTIAMQHGILTEFSADTL
AHAEKVPEEVPEEDMKDRLDLRDELIITIDGADAKDLDDAVQVKKLSNGNYQLGVYIADV
SHYVTEGSPLDIEAQERGTSVYLTDRVIPMLPTRLSNGICSLNPQVNRLTMSCRMEIDQQ
GHVVDYEIFESVIKSTERMTYSDVNQLIAKDDDVLTTKYQHLYPMIDDMTELHGILEAMR
KERGAISFEDKESKIYLDNEGNPIEIVLRERGIAERMIESFMLAANETVARHFHERMLPF
IYRIHEHPKESKIQTFFEFISNFGVSVKGVKDDIEPRELQKVLEQAADLPEKPIISMMLL
RSMQQAKYSEESLGHYGLAATYYTHFTSPIRRYPDLLVHRLIKEYAKENPVSEKLQAKWQ
AKIPDIALHSSQMERRAVEAERETDAMKKAQYMEQFVGETFEGVISSVTKFGVFVELPNT
VEGLIHINQLKDDYYQYIESHLALVGERTRKIYKIGQRVVVKVVKVDVDNREIDFEILSS
EVISDESITLKQSNRQRKERRNDRVTKSGKYPEKKDAMSSSTNKGKKKTAPFYNKVAKGK
KKKK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacaattagagaaagtattatttcttttatggaaacatcggataaagcgagt
ttttctattcaagaaatagcggctggtttagaattagaacaaagccaaaattttaagtta
ttagttcaaacaattgccagtatggagcgagacaaagaagtagaatttacaagtaaaggt
aaaatcaaattacctatggagctaacaatagaaggaacttttagagctaatgaccgaggc
tttggttttgtcactatctcaccagaagagccagatgtgtatattgctaaggagatgact
aatttcgcgttaaacggggataccgttaaacttgatattatcaagccaggtaatccaatt
gataatcaagcagcagaaggacgcattgttgaagttatcgctcgtgcaatgacacagcta
gtaggagagtttgttgcatatgatgaagacctaatcaatgaaactgggctgtatgggtac
atttcacctaaaagtaaattgatgagtcattataaagtctacattgccgcagaaggcatt
cacccagaagatggtgaaatatgtgtggttgaaatcactcattatccagaaaagggctat
gaggatcaaatagaaggtattgtcaaacaaacgattggtcataaaaatgagccaggcatg
gatatcttaactattgcaatgcaacatggtattttaacagagttttcagcagatacatta
gctcatgctgaaaaagtgccagaagaagtaccagaagaagatatgaaagatcgattagat
ttacgagatgaattaatcatcactattgacggagcggatgctaaagatttagatgatgct
gtacaagtgaaaaaactaagtaatggaaattatcaattaggcgtttatattgcggatgtt
tctcactatgtaacggaagggtcacctttagatatagaagcgcaagaacgtgggacaagt
gtttatttaacagaccgtgtaattccaatgttaccaacacgtttatcaaatggtatttgc
tcattaaatccacaagttaatcgtctgacgatgagttgtcgtatggagattgatcaacaa
ggacacgtcgtggattacgaaatttttgagagtgtgattaaatcgactgaacgtatgacc
tattcagatgtcaatcagttaattgctaaagatgatgatgtcttaactactaaatatcaa
catctatacccaatgattgatgatatgacagagttacatggtattttagaagcaatgcgt
aaagaacgtggcgctatttcttttgaagacaaggaatctaaaatttatttagataatgaa
ggaaatcctattgagattgtcttaagagaacgtggtatcgcagaacgtatgattgaatca
tttatgttagccgccaatgaaacggttgcacgtcattttcatgaaagaatgttaccattt
atctaccgaattcatgaacatccaaaagaatcaaaaattcaaacgttctttgaatttatt
agtaattttggcgtatcagttaaaggagtaaaagatgatattgaaccaagagagctacaa
aaagtcttggaacaagcagctgatttacctgaaaagccaattattagcatgatgttatta
agaagtatgcaacaagcaaaatacagtgaagaatcactgggacattacggtttagcagct
acgtattatacccactttacgtcgccaattagacgttatcctgatctactggttcatcgc
ttaattaaagaatatgcaaaagaaaacccagtgtcagaaaaacttcaagctaaatggcaa
gcgaaaatacctgatattgccctacattcttctcaaatggaacgacgagctgttgaagca
gaacgagaaacagacgcaatgaaaaaagcacaatacatggaacaatttgtgggagaaacc
tttgaaggagttattagttctgtgacaaaatttggcgtgtttgtggagttgccaaatacg
gtagaaggtttgatacatattaatcaactaaaagatgactattatcaatatattgaaagt
catttagcattagttggagaacgcacaagaaaaatatataaaattgggcagcgagtagtc
gttaaagtggttaaggtagatgttgataatcgtgaaattgattttgaaattttatcatca
gaagtcattagtgatgagtcaattacgcttaaacaatcaaatcgtcaacgaaaagaacgt
cgtaatgatcgcgtaactaaatcaggaaaatatcctgaaaagaaagacgctatgtcttct
tcaacgaataaaggaaagaaaaaaacagcgcctttttataataaagtagccaaagggaaa
aagaagaaaaaatag
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